Transcript: Human XM_011510502.2

PREDICTED: Homo sapiens ectodysplasin A receptor (EDAR), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
EDAR (10913)
Length:
4073
CDS:
51..1637

Additional Resources:

NCBI RefSeq record:
XM_011510502.2
NBCI Gene record:
EDAR (10913)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011510502.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000358920 CAAGTCAGCCGGGATTCAAAG pLKO_005 1241 CDS 100% 10.800 15.120 N EDAR n/a
2 TRCN0000358854 GACTAGAGCCGGGATACTTTC pLKO_005 1820 3UTR 100% 10.800 15.120 N EDAR n/a
3 TRCN0000358921 TCAAGGAGCCAGACGAAATAA pLKO_005 1768 3UTR 100% 15.000 10.500 N EDAR n/a
4 TRCN0000358853 ACGATGCCTCATCCGAGAATG pLKO_005 1099 CDS 100% 10.800 7.560 N EDAR n/a
5 TRCN0000059233 CCTCATCATCATGTTCTACAT pLKO.1 803 CDS 100% 4.950 3.465 N EDAR n/a
6 TRCN0000059236 CGGTGAGAACGAGTACTACAA pLKO.1 287 CDS 100% 4.950 3.465 N EDAR n/a
7 TRCN0000059237 CGGGATTCAAAGCCGGAGGAA pLKO.1 1250 CDS 100% 0.880 0.616 N EDAR n/a
8 TRCN0000059234 GCCATTTGATTGCCTCGAGAA pLKO.1 1334 CDS 100% 0.000 0.000 N EDAR n/a
9 TRCN0000059235 CGAGAAGGATGAATTTGAGAA pLKO.1 1040 CDS 100% 4.950 2.970 N EDAR n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011510502.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.