Transcript: Human XM_011511963.2

PREDICTED: Homo sapiens zinc finger RANBP2-type containing 3 (ZRANB3), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZRANB3 (84083)
Length:
6671
CDS:
65..3298

Additional Resources:

NCBI RefSeq record:
XM_011511963.2
NBCI Gene record:
ZRANB3 (84083)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011511963.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000425312 GGTTGATAACTCGCATGTTTA pLKO_005 990 CDS 100% 13.200 18.480 N ZRANB3 n/a
2 TRCN0000131207 GCAATGTAGTCTCTGCACCTA pLKO.1 1939 CDS 100% 2.640 3.696 N ZRANB3 n/a
3 TRCN0000415483 CAAGAGATATCATCGATTATG pLKO_005 1746 CDS 100% 13.200 10.560 N ZRANB3 n/a
4 TRCN0000420834 GAATCGCAAGGCTCAAGTTAC pLKO_005 1441 CDS 100% 10.800 8.640 N ZRANB3 n/a
5 TRCN0000416332 TTACATGTGGAAGACTTTAAT pLKO_005 3332 3UTR 100% 15.000 10.500 N ZRANB3 n/a
6 TRCN0000432906 TTCAGAATGATTCGCTTAAAT pLKO_005 1065 CDS 100% 15.000 10.500 N ZRANB3 n/a
7 TRCN0000128021 GCCAGTGTATGACACCTTAAT pLKO.1 2242 CDS 100% 13.200 9.240 N ZRANB3 n/a
8 TRCN0000422614 TCTACATCCAAAGGCTATTTG pLKO_005 2741 CDS 100% 13.200 9.240 N ZRANB3 n/a
9 TRCN0000239043 TGAATATTCACTACCTTATTG pLKO_005 1383 CDS 100% 13.200 9.240 N Zranb3 n/a
10 TRCN0000430822 TGAATATTCACTACCTTATTG pLKO_005 1383 CDS 100% 13.200 9.240 N ZRANB3 n/a
11 TRCN0000414741 ACAGAAACTAAGATACAATAC pLKO_005 3473 3UTR 100% 10.800 7.560 N ZRANB3 n/a
12 TRCN0000128044 GCAAGCTTTCAGCTGAAACAA pLKO.1 2378 CDS 100% 5.625 3.938 N ZRANB3 n/a
13 TRCN0000129745 CCTTAATGTTCTGTGCAAGTA pLKO.1 2256 CDS 100% 4.950 3.465 N ZRANB3 n/a
14 TRCN0000129972 GAAGACAATCTCTAGCATCAA pLKO.1 3237 CDS 100% 4.950 3.465 N ZRANB3 n/a
15 TRCN0000127874 GAAATGTGTGAGACTCCTCAA pLKO.1 1988 CDS 100% 4.050 2.835 N ZRANB3 n/a
16 TRCN0000430888 GTTTGTTTAATATATCGAGAG pLKO_005 3368 3UTR 100% 2.250 1.575 N ZRANB3 n/a
17 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 4229 3UTR 100% 10.800 5.400 Y SMIM11A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011511963.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.