Transcript: Human XM_011514550.2

PREDICTED: Homo sapiens HIVEP zinc finger 1 (HIVEP1), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HIVEP1 (3096)
Length:
9067
CDS:
346..8529

Additional Resources:

NCBI RefSeq record:
XM_011514550.2
NBCI Gene record:
HIVEP1 (3096)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011514550.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235474 TAGGCGTCTCAGTAGGTTTAA pLKO_005 6812 CDS 100% 13.200 18.480 N HIVEP1 n/a
2 TRCN0000237897 TGTCAATAAGTCCGGCTAATT pLKO_005 1445 CDS 100% 13.200 18.480 N HIVEP1 n/a
3 TRCN0000004980 CGAGAGTTAATGAAGCTAGTA pLKO.1 5726 CDS 100% 4.950 6.930 N HIVEP1 n/a
4 TRCN0000004978 GCGTAGTGAAACCTTGTCAAA pLKO.1 4164 CDS 100% 4.950 6.930 N HIVEP1 n/a
5 TRCN0000235475 CAATCGAGGACACCTTATAAT pLKO_005 7543 CDS 100% 15.000 10.500 N HIVEP1 n/a
6 TRCN0000235476 CATGCCGACCACAGGTTATTC pLKO_005 2895 CDS 100% 13.200 9.240 N HIVEP1 n/a
7 TRCN0000004977 CCAGGTAGTTATTTGTGTTTA pLKO.1 8806 3UTR 100% 13.200 9.240 N HIVEP1 n/a
8 TRCN0000004979 CCCAGCAAATAGTTTAGACAT pLKO.1 5619 CDS 100% 4.950 3.465 N HIVEP1 n/a
9 TRCN0000004981 CCTCCTATACAAACACTGCAT pLKO.1 938 CDS 100% 2.640 1.848 N HIVEP1 n/a
10 TRCN0000235473 ATGTTCCACTGTTGAATATAA pLKO_005 8867 3UTR 100% 15.000 9.000 N HIVEP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011514550.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.