Transcript: Human XM_011514726.2

PREDICTED: Homo sapiens leucine rich repeat containing 1 (LRRC1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LRRC1 (55227)
Length:
3548
CDS:
642..2216

Additional Resources:

NCBI RefSeq record:
XM_011514726.2
NBCI Gene record:
LRRC1 (55227)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011514726.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000416928 TGTACGTGACAACAGACTAAC pLKO_005 1664 CDS 100% 10.800 15.120 N LRRC1 n/a
2 TRCN0000147011 CCAGCTAGTCAAATTACGAAA pLKO.1 809 CDS 100% 4.950 6.930 N LRRC1 n/a
3 TRCN0000148293 CGAAGACTAGAAGAACTTGAT pLKO.1 1161 CDS 100% 4.950 3.960 N LRRC1 n/a
4 TRCN0000150152 GCTAGTCAAATTACGAAAGCT pLKO.1 812 CDS 100% 3.000 2.400 N LRRC1 n/a
5 TRCN0000425732 AGACTAGAAGAACTTGATTTA pLKO_005 1164 CDS 100% 13.200 9.240 N LRRC1 n/a
6 TRCN0000425844 TGGAGCCCTCTTACATCTAAA pLKO_005 1220 CDS 100% 13.200 9.240 N LRRC1 n/a
7 TRCN0000433976 ACCACTTCTGTGTAGAGTTTC pLKO_005 2202 CDS 100% 10.800 7.560 N LRRC1 n/a
8 TRCN0000423844 ACTGACTAGGTTGCCAGAAAG pLKO_005 989 CDS 100% 10.800 7.560 N LRRC1 n/a
9 TRCN0000418628 AGAGTCAGTGCGATCCGATTT pLKO_005 2001 CDS 100% 10.800 7.560 N LRRC1 n/a
10 TRCN0000148055 GAACTAGATGTGTCTCGAAAT pLKO.1 897 CDS 100% 10.800 7.560 N LRRC1 n/a
11 TRCN0000146591 CATATCTTCCTGACTCTCTTA pLKO.1 1132 CDS 100% 4.950 3.465 N LRRC1 n/a
12 TRCN0000147640 GCAATCTTTATAACCTGGCTT pLKO.1 1084 CDS 100% 2.640 1.848 N LRRC1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011514726.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.