Transcript: Human XM_011515961.2

PREDICTED: Homo sapiens semaphorin 3D (SEMA3D), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SEMA3D (223117)
Length:
6457
CDS:
458..2209

Additional Resources:

NCBI RefSeq record:
XM_011515961.2
NBCI Gene record:
SEMA3D (223117)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011515961.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000373484 GAGTCTACAAGGAGGATATTA pLKO_005 357 5UTR 100% 15.000 21.000 N SEMA3D n/a
2 TRCN0000373414 ACCTATGACCCACTGATTAAG pLKO_005 1079 CDS 100% 13.200 18.480 N SEMA3D n/a
3 TRCN0000063215 GCTCTCGATATGCTCCTACTT pLKO.1 1551 CDS 100% 4.950 6.930 N SEMA3D n/a
4 TRCN0000373413 AGAGTACTTCAGCCCTATAAC pLKO_005 272 5UTR 100% 13.200 9.240 N SEMA3D n/a
5 TRCN0000063216 CCACTACATCAGAACTGACAT pLKO.1 550 CDS 100% 4.950 3.465 N SEMA3D n/a
6 TRCN0000063214 CCTGTAGTATATGGAGTCTTT pLKO.1 890 CDS 100% 4.950 3.465 N SEMA3D n/a
7 TRCN0000063213 GCTGCTTTCAAATAGCTGTAT pLKO.1 31 5UTR 100% 4.950 3.465 N SEMA3D n/a
8 TRCN0000063217 GCCCGATGAAAGAATCATCAA pLKO.1 1789 CDS 100% 0.495 0.347 N SEMA3D n/a
9 TRCN0000112284 GCACACTTTCATCCACACCAT pLKO.1 1882 CDS 100% 2.640 1.584 N Sema3d n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011515961.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.