Transcript: Human XM_011516571.3

PREDICTED: Homo sapiens calcium voltage-gated channel auxiliary subunit alpha2delta 1 (CACNA2D1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CACNA2D1 (781)
Length:
7286
CDS:
21..3338

Additional Resources:

NCBI RefSeq record:
XM_011516571.3
NBCI Gene record:
CACNA2D1 (781)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011516571.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000043768 CCCATCATGTAACGCGGATTT pLKO.1 2108 CDS 100% 10.800 15.120 N CACNA2D1 n/a
2 TRCN0000043772 CCCTGTGGTATATCATTGGAA pLKO.1 3265 CDS 100% 3.000 4.200 N CACNA2D1 n/a
3 TRCN0000043771 GCACGATTTGTTGTGACTGAT pLKO.1 2217 CDS 100% 4.950 3.960 N CACNA2D1 n/a
4 TRCN0000043769 CCCAGGAGATATTTAACAAAT pLKO.1 1126 CDS 100% 13.200 9.240 N CACNA2D1 n/a
5 TRCN0000043770 GCCAGGGATATTGAGAAACTT pLKO.1 267 CDS 100% 5.625 3.938 N CACNA2D1 n/a
6 TRCN0000069651 CTTGTCATTACTGGAACTCTA pLKO.1 1392 CDS 100% 4.950 3.960 N LOC384313 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011516571.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.