Transcript: Human XM_011516932.3

PREDICTED: Homo sapiens zinc fingers and homeoboxes 2 (ZHX2), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZHX2 (22882)
Length:
5138
CDS:
1348..3861

Additional Resources:

NCBI RefSeq record:
XM_011516932.3
NBCI Gene record:
ZHX2 (22882)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011516932.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000432680 ACGAAGTGATAGAGGTGAAAT pLKO_005 1520 CDS 100% 13.200 18.480 N ZHX2 n/a
2 TRCN0000426962 GTTTGCCACCCAGCGCTTAAA pLKO_005 2274 CDS 100% 13.200 18.480 N ZHX2 n/a
3 TRCN0000426171 ATCATGCGTACCCAGACTTTG pLKO_005 2912 CDS 100% 10.800 15.120 N ZHX2 n/a
4 TRCN0000420790 GAGTCGAGCGTTGTGGATTAC pLKO_005 3706 CDS 100% 10.800 15.120 N ZHX2 n/a
5 TRCN0000413341 TGGTTCAGTGACCACCGATAT pLKO_005 2803 CDS 100% 10.800 15.120 N ZHX2 n/a
6 TRCN0000017745 CCGTAGCAAGGAAAGCAACAA pLKO.1 3467 CDS 100% 4.950 6.930 N ZHX2 n/a
7 TRCN0000017744 CGGACATCACAAGTAGTAGAA pLKO.1 1387 CDS 100% 4.950 6.930 N ZHX2 n/a
8 TRCN0000434439 GTGATGTGGTTCCACAATATT pLKO_005 3518 CDS 100% 15.000 12.000 N ZHX2 n/a
9 TRCN0000017743 CCCACTAAATACTACCAAATA pLKO.1 2127 CDS 100% 13.200 9.240 N ZHX2 n/a
10 TRCN0000415037 TCTGGGATCTCGGTGAGTAAA pLKO_005 1876 CDS 100% 13.200 9.240 N ZHX2 n/a
11 TRCN0000433597 ACTCCAAGTGGAACTACTTAG pLKO_005 3964 3UTR 100% 10.800 7.560 N ZHX2 n/a
12 TRCN0000415023 TGCAGCATCCCAACGTGATTC pLKO_005 1643 CDS 100% 10.800 7.560 N ZHX2 n/a
13 TRCN0000430192 TGCTATACTGGAACCGATTTG pLKO_005 4139 3UTR 100% 10.800 7.560 N ZHX2 n/a
14 TRCN0000017747 CCAAGGTGGTTATGAGTGCAA pLKO.1 1569 CDS 100% 2.640 1.848 N ZHX2 n/a
15 TRCN0000017746 CGATCTCAGATAGATCAGATA pLKO.1 3755 CDS 100% 0.495 0.347 N ZHX2 n/a
16 TRCN0000414356 GCCACGATGATCAACTCTTTC pLKO_005 2170 CDS 100% 10.800 6.480 N ZHX2 n/a
17 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 108 5UTR 100% 5.625 2.813 Y KLHL30 n/a
18 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 108 5UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011516932.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.