Transcript: Human XM_011517206.2

PREDICTED: Homo sapiens zinc finger and AT-hook domain containing (ZFAT), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZFAT (57623)
Length:
3613
CDS:
143..3613

Additional Resources:

NCBI RefSeq record:
XM_011517206.2
NBCI Gene record:
ZFAT (57623)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011517206.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000148980 GCCACGTAATTCAGAAACACA pLKO.1 2466 CDS 100% 3.000 4.200 N ZFAT n/a
2 TRCN0000131174 GCCATTCAGCAGACACCTTAT pLKO.1 848 CDS 100% 10.800 8.640 N ZFAT n/a
3 TRCN0000148961 GCACCAAATGGGAGTTCAATA pLKO.1 3258 CDS 100% 13.200 9.240 N ZFAT n/a
4 TRCN0000150021 CAACAAGGTCTTCAAGTTCAA pLKO.1 934 CDS 100% 4.950 3.465 N ZFAT n/a
5 TRCN0000147064 CACTTGTGAATACTGCAACAA pLKO.1 919 CDS 100% 4.950 3.465 N ZFAT n/a
6 TRCN0000148788 CATCTGCATTATCGTGCTGAA pLKO.1 508 CDS 100% 4.050 2.835 N ZFAT n/a
7 TRCN0000129521 GCACAAGAAGATCAAGCAGCA pLKO.1 1150 CDS 100% 2.160 1.512 N ZFAT n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011517206.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.