Transcript: Human XM_011517682.2

PREDICTED: Homo sapiens unc-13 homolog B (UNC13B), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
UNC13B (10497)
Length:
11591
CDS:
4318..10287

Additional Resources:

NCBI RefSeq record:
XM_011517682.2
NBCI Gene record:
UNC13B (10497)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011517682.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000380609 CAACAACTGCCACGACTTATA pLKO_005 8265 CDS 100% 13.200 18.480 N UNC13B n/a
2 TRCN0000381554 TGATGAGTGTGTTCGACAAAT pLKO_005 9144 CDS 100% 13.200 18.480 N UNC13B n/a
3 TRCN0000380732 CCGCATTAAGGTGCGTGTATG pLKO_005 7437 CDS 100% 10.800 15.120 N UNC13B n/a
4 TRCN0000380075 GTAACCGGCTTAGGGTCTTTG pLKO_005 10357 3UTR 100% 10.800 15.120 N UNC13B n/a
5 TRCN0000320458 GAAGATCCGAGAGCGAAATAA pLKO_005 7122 CDS 100% 15.000 12.000 N UNC13B n/a
6 TRCN0000002356 CTCTCTACATACAGGAATAAT pLKO.1 8071 CDS 100% 15.000 10.500 N UNC13B n/a
7 TRCN0000320384 CTCTCTACATACAGGAATAAT pLKO_005 8071 CDS 100% 15.000 10.500 N UNC13B n/a
8 TRCN0000002358 CCGGACCCAGAACATTATCAT pLKO.1 7083 CDS 100% 5.625 3.938 N UNC13B n/a
9 TRCN0000320383 CCGGACCCAGAACATTATCAT pLKO_005 7083 CDS 100% 5.625 3.938 N UNC13B n/a
10 TRCN0000002360 CCATTAAGAGAGAAGGACAAA pLKO.1 10532 3UTR 100% 4.950 3.465 N UNC13B n/a
11 TRCN0000320385 CCATTAAGAGAGAAGGACAAA pLKO_005 10532 3UTR 100% 4.950 3.465 N UNC13B n/a
12 TRCN0000002359 CGAGTCCTATGAGTTGCAGAT pLKO.1 10026 CDS 100% 4.050 2.835 N UNC13B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011517682.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.