Transcript: Human XM_011519147.3

PREDICTED: Homo sapiens cell division cycle 14B (CDC14B), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CDC14B (8555)
Length:
2172
CDS:
3..1466

Additional Resources:

NCBI RefSeq record:
XM_011519147.3
NBCI Gene record:
CDC14B (8555)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011519147.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000381974 GTGATAGACTTCGGGCCTTGA pLKO_005 1216 CDS 100% 4.050 5.670 N CDC14B n/a
2 TRCN0000380135 ACTGATGCCATTGTCAAAGAA pLKO_005 807 CDS 100% 5.625 3.375 N CDC14B n/a
3 TRCN0000005979 CTCCTGAGACTTATATTCAAT pLKO.1 664 CDS 100% 5.625 3.375 N CDC14B n/a
4 TRCN0000273454 CTCCTGAGACTTATATTCAAT pLKO_005 664 CDS 100% 5.625 3.375 N CDC14B n/a
5 TRCN0000273457 CACAATGTTACTACCATTATT pLKO_005 696 CDS 100% 15.000 7.500 Y CDC14B n/a
6 TRCN0000273455 TTGGATGCTACATGGTTATAT pLKO_005 340 CDS 100% 15.000 7.500 Y CDC14B n/a
7 TRCN0000005978 GAGTGCATCAAATGTACATTA pLKO.1 131 CDS 100% 13.200 6.600 Y CDC14B n/a
8 TRCN0000284982 GGATAATACCAGACCGATTTA pLKO_005 586 CDS 100% 13.200 6.600 Y CDC14B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011519147.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.