Transcript: Human XM_011520812.3

PREDICTED: Homo sapiens BICD cargo adaptor 1 (BICD1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
BICD1 (636)
Length:
9421
CDS:
560..3526

Additional Resources:

NCBI RefSeq record:
XM_011520812.3
NBCI Gene record:
BICD1 (636)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011520812.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000434304 AGCATGAGATTAAGCGATTTG pLKO_005 1158 CDS 100% 10.800 15.120 N BICD1 n/a
2 TRCN0000219976 GGCTTTACCTCGATAGCATAA pLKO.1 3704 3UTR 100% 10.800 15.120 N BICD1 n/a
3 TRCN0000133902 CACTTTGTTACGAATGGCTAT pLKO.1 2890 CDS 100% 4.050 5.670 N BICD1 n/a
4 TRCN0000416187 ACCATGACGAAGCTTAGAAAT pLKO_005 2726 CDS 100% 13.200 10.560 N BICD1 n/a
5 TRCN0000134600 GAAGGATGAAATCCGAGAATA pLKO.1 1021 CDS 100% 13.200 10.560 N BICD1 n/a
6 TRCN0000137300 GCCATCCGATTGAAAGAGATT pLKO.1 1217 CDS 100% 4.950 3.960 N BICD1 n/a
7 TRCN0000412445 TAGCTAATCTCAAGAACAAAT pLKO_005 2676 CDS 100% 13.200 9.240 N BICD1 n/a
8 TRCN0000219975 TCGGTTGTTAGATGTACAATT pLKO.1 3499 CDS 100% 13.200 9.240 N BICD1 n/a
9 TRCN0000414230 CATCGAAGGAGGCTTACTATC pLKO_005 855 CDS 100% 10.800 7.560 N BICD1 n/a
10 TRCN0000428539 TATATTGCAGTATCATCTTTC pLKO_005 3751 3UTR 100% 10.800 7.560 N BICD1 n/a
11 TRCN0000137505 GATGGGAGTGAACCAAACAAT pLKO.1 1382 CDS 100% 5.625 3.938 N BICD1 n/a
12 TRCN0000136849 CAGGTTGAATACGAAGGCTTA pLKO.1 1136 CDS 100% 4.050 2.835 N BICD1 n/a
13 TRCN0000138315 CGGTAGAAACAAGGACCTCAT pLKO.1 2271 CDS 100% 4.050 2.835 N BICD1 n/a
14 TRCN0000134531 GATAAAGACAAGGAAGCCTTA pLKO.1 2549 CDS 100% 4.050 2.835 N BICD1 n/a
15 TRCN0000426634 TTCCTACCTACAGAATTTATT pLKO_005 3181 CDS 100% 15.000 9.000 N BICD1 n/a
16 TRCN0000137205 GAAGGCCAAGTATGAGAGTAA pLKO.1 1912 CDS 100% 4.950 2.970 N BICD1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011520812.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.