Transcript: Human XM_011523774.2

PREDICTED: Homo sapiens SMG6 nonsense mediated mRNA decay factor (SMG6), transcript variant X9, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SMG6 (23293)
Length:
2916
CDS:
117..2810

Additional Resources:

NCBI RefSeq record:
XM_011523774.2
NBCI Gene record:
SMG6 (23293)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011523774.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000418284 ACAAGAGGATCGTAGTCTAAA pLKO_005 494 CDS 100% 13.200 18.480 N SMG6 n/a
2 TRCN0000040017 GCCCGTTAAAGATGTCTGCAA pLKO.1 392 CDS 100% 2.640 2.112 N SMG6 n/a
3 TRCN0000424681 GCCAGTGATACAGCGAATTAT pLKO_005 2340 CDS 100% 15.000 10.500 N SMG6 n/a
4 TRCN0000416285 AGGAGGAAGTTGCGAATAAAC pLKO_005 679 CDS 100% 13.200 9.240 N SMG6 n/a
5 TRCN0000433641 TTGACGCTGTCTATTACTATA pLKO_005 2464 CDS 100% 13.200 9.240 N SMG6 n/a
6 TRCN0000040014 CGCTCAGACAAACGAAGGAAT pLKO.1 852 CDS 100% 4.950 3.465 N SMG6 n/a
7 TRCN0000040015 GCAGGTTACTTACAAGTTCAA pLKO.1 2192 CDS 100% 4.950 3.465 N SMG6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011523774.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.