Transcript: Human XM_011525269.3

PREDICTED: Homo sapiens ATPase family AAA domain containing 5 (ATAD5), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ATAD5 (79915)
Length:
8012
CDS:
1519..7056

Additional Resources:

NCBI RefSeq record:
XM_011525269.3
NBCI Gene record:
ATAD5 (79915)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011525269.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000136103 CCAGATTTGTTGAAACGGCAA pLKO.1 4045 CDS 100% 2.160 3.024 N ATAD5 n/a
2 TRCN0000138769 GCTAAATGTTTCCACGCCCAA pLKO.1 3273 CDS 100% 2.160 3.024 N ATAD5 n/a
3 TRCN0000422494 TAGTCAGTCAGCAGCTAATTT pLKO_005 6795 CDS 100% 15.000 12.000 N ATAD5 n/a
4 TRCN0000419540 TGATTCAGAGAGCCCTATTAG pLKO_005 3465 CDS 100% 13.200 10.560 N ATAD5 n/a
5 TRCN0000134451 GAACGACCATTAACCCTTTAT pLKO.1 5758 CDS 100% 13.200 9.240 N ATAD5 n/a
6 TRCN0000414077 GTAATAGACAAGCTAGTATAA pLKO_005 6884 CDS 100% 13.200 9.240 N ATAD5 n/a
7 TRCN0000420217 TGTTGCCAGCTACCTACAAAT pLKO_005 5604 CDS 100% 13.200 9.240 N ATAD5 n/a
8 TRCN0000134232 GCCAGTGAACTTATAGGAAAT pLKO.1 4708 CDS 100% 10.800 7.560 N ATAD5 n/a
9 TRCN0000135019 GCAAGATAAAGTCACCTGAAT pLKO.1 1763 CDS 100% 4.950 3.465 N ATAD5 n/a
10 TRCN0000074886 AGAGAGAAAGGAGAGACAATT pLKO.1 310 5UTR 100% 13.200 6.600 Y RPS17 n/a
11 TRCN0000291044 AGAGAGAAAGGAGAGACAATT pLKO_005 310 5UTR 100% 13.200 6.600 Y RPS17 n/a
12 TRCN0000139826 CCTCCTGAATAGCTGGGATTA pLKO.1 7667 3UTR 100% 10.800 5.400 Y SYNPO2 n/a
13 TRCN0000265672 AGAGAAAGGAGAGACAATTAT pLKO_005 312 5UTR 100% 15.000 7.500 Y RPS17P16 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011525269.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.