Transcript: Human XM_011525345.2

PREDICTED: Homo sapiens nuclear speckle splicing regulatory protein 1 (NSRP1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NSRP1 (84081)
Length:
1988
CDS:
16..1629

Additional Resources:

NCBI RefSeq record:
XM_011525345.2
NBCI Gene record:
NSRP1 (84081)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011525345.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000428965 TAATTCCCTGTAGGTACATAA pLKO_005 1880 3UTR 100% 13.200 18.480 N NSRP1 n/a
2 TRCN0000429718 GTGGATGTTTGGCTGAATTTA pLKO_005 1796 3UTR 100% 15.000 10.500 N NSRP1 n/a
3 TRCN0000423332 CCATTACACTGACCGTGATTA pLKO_005 942 CDS 100% 13.200 9.240 N NSRP1 n/a
4 TRCN0000419336 GGGTTAATGCAAAGACCTATA pLKO_005 1589 CDS 100% 10.800 7.560 N NSRP1 n/a
5 TRCN0000074941 GCTAAGAAGCAGGCCATGAAA pLKO.1 100 CDS 100% 5.625 3.938 N NSRP1 n/a
6 TRCN0000074940 CGGAAAGAAAGGGATTCTCAT pLKO.1 964 CDS 100% 4.950 3.465 N NSRP1 n/a
7 TRCN0000074942 CAGCCCAAATTCTAGGGCAAA pLKO.1 1320 CDS 100% 4.050 2.835 N NSRP1 n/a
8 TRCN0000074939 CCAGTCATAGAGATTCCCATT pLKO.1 998 CDS 100% 4.050 2.835 N NSRP1 n/a
9 TRCN0000074938 CGTGCCTGTAATACCAACATT pLKO.1 1960 3UTR 100% 5.625 3.375 N NSRP1 n/a
10 TRCN0000123533 TGTCAGCTAGAGACAGGTATT pLKO.1 1550 CDS 100% 10.800 7.560 N Nsrp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011525345.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.