Transcript: Human XM_011526684.2

PREDICTED: Homo sapiens HAUS augmin like complex subunit 5 (HAUS5), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HAUS5 (23354)
Length:
4015
CDS:
239..1840

Additional Resources:

NCBI RefSeq record:
XM_011526684.2
NBCI Gene record:
HAUS5 (23354)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011526684.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000263339 CTGCGTGGGTTACTCAATTTA pLKO_005 2746 3UTR 100% 15.000 21.000 N HAUS5 n/a
2 TRCN0000263338 GACCACTTTGGCACTTCGTAC pLKO_005 590 CDS 100% 4.050 2.835 N HAUS5 n/a
3 TRCN0000139826 CCTCCTGAATAGCTGGGATTA pLKO.1 3420 3UTR 100% 10.800 5.400 Y SYNPO2 n/a
4 TRCN0000165027 GAACTCCTGACCTCAAGTGAT pLKO.1 3172 3UTR 100% 4.950 2.475 Y LOC387873 n/a
5 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 3209 3UTR 100% 5.625 2.813 Y KLHL30 n/a
6 TRCN0000157610 GTGGCATGATCTCAGCTCATT pLKO.1 3008 3UTR 100% 4.950 2.475 Y CCNJL n/a
7 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 3209 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011526684.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.