Transcript: Human XM_011527205.2

PREDICTED: Homo sapiens ryanodine receptor 1 (RYR1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RYR1 (6261)
Length:
15254
CDS:
81..15110

Additional Resources:

NCBI RefSeq record:
XM_011527205.2
NBCI Gene record:
RYR1 (6261)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011527205.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000359103 CTCTGCATCATTGGCTATAAT pLKO_005 13962 CDS 100% 15.000 21.000 N RYR1 n/a
2 TRCN0000359102 CAACACCACCACGTACTATTA pLKO_005 4361 CDS 100% 13.200 18.480 N RYR1 n/a
3 TRCN0000359171 GCTCCAACCAAGATCTTATTA pLKO_005 1921 CDS 100% 15.000 10.500 N RYR1 n/a
4 TRCN0000053297 CCGCCTCTTTCATGGACATAT pLKO.1 737 CDS 100% 13.200 9.240 N RYR1 n/a
5 TRCN0000359104 CGAAGCGGATGAGAACGAAAT pLKO_005 12422 CDS 100% 10.800 7.560 N RYR1 n/a
6 TRCN0000053294 CCGGGAATTTCTGCACAACAA pLKO.1 10727 CDS 100% 4.950 3.465 N RYR1 n/a
7 TRCN0000053293 CGACAGGATTTGCTTGACTTT pLKO.1 6162 CDS 100% 4.950 3.465 N RYR1 n/a
8 TRCN0000174210 CGACAGGATTTGCTTGACTTT pLKO.1 6162 CDS 100% 4.950 3.465 N RYR1 n/a
9 TRCN0000053295 GCTTCTCTAATCCGTGGCAAT pLKO.1 1656 CDS 100% 4.050 2.835 N RYR1 n/a
10 TRCN0000053296 GCCTCTAACAAGGAGAAGGAA pLKO.1 9171 CDS 100% 3.000 2.100 N RYR1 n/a
11 TRCN0000069749 GCCTTCAACTTCTTCCGCAAA pLKO.1 14559 CDS 100% 4.050 2.430 N LOC381861 n/a
12 TRCN0000413041 AGGAAGAAGAGGAGGAGGAAG pLKO_005 5698 CDS 100% 4.050 2.025 Y Myt1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011527205.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.