Transcript: Human XM_011528485.2

PREDICTED: Homo sapiens regulator of G protein signaling 19 (RGS19), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RGS19 (10287)
Length:
2072
CDS:
747..1400

Additional Resources:

NCBI RefSeq record:
XM_011528485.2
NBCI Gene record:
RGS19 (10287)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011528485.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000036491 GAGGCTCATCTACGAGGACTA pLKO.1 1163 CDS 100% 4.050 5.670 N RGS19 n/a
2 TRCN0000300428 GAGGCTCATCTACGAGGACTA pLKO_005 1163 CDS 100% 4.050 5.670 N RGS19 n/a
3 TRCN0000310804 CAGAACCTCAGAACCAGATTT pLKO_005 1869 3UTR 100% 13.200 9.240 N RGS19 n/a
4 TRCN0000036489 CCCTTCAATGTCCAGTCATGA pLKO.1 806 CDS 100% 4.950 3.465 N RGS19 n/a
5 TRCN0000300359 CCCTTCAATGTCCAGTCATGA pLKO_005 806 CDS 100% 4.950 3.465 N RGS19 n/a
6 TRCN0000036493 CAGCGAGGAGAACATGCTCTT pLKO.1 1082 CDS 100% 4.050 2.835 N RGS19 n/a
7 TRCN0000300429 CAGCGAGGAGAACATGCTCTT pLKO_005 1082 CDS 100% 4.050 2.835 N RGS19 n/a
8 TRCN0000036492 GCTGCAGATCTACACGCTCAT pLKO.1 1289 CDS 100% 4.050 2.835 N RGS19 n/a
9 TRCN0000300427 GCTGCAGATCTACACGCTCAT pLKO_005 1289 CDS 100% 4.050 2.835 N RGS19 n/a
10 TRCN0000036490 GTGAAGTATGTGCCACGCCAA pLKO.1 964 CDS 100% 2.160 1.512 N RGS19 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011528485.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.