Transcript: Human XM_011529277.2

PREDICTED: Homo sapiens double zinc ribbon and ankyrin repeat domains 1 (DZANK1), transcript variant X19, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DZANK1 (55184)
Length:
4397
CDS:
2046..3365

Additional Resources:

NCBI RefSeq record:
XM_011529277.2
NBCI Gene record:
DZANK1 (55184)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011529277.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000141256 CCAGAGTACCTCAGATACTAT pLKO.1 2828 CDS 100% 5.625 7.875 N DZANK1 n/a
2 TRCN0000140966 CAGGTGTTATGCTCAGAACAA pLKO.1 2579 CDS 100% 4.950 6.930 N DZANK1 n/a
3 TRCN0000139001 CCAACCACACACTGTTCTGTA pLKO.1 4211 3UTR 100% 4.950 3.465 N DZANK1 n/a
4 TRCN0000139412 CCTCAGGTGTTATGCTCAGAA pLKO.1 2576 CDS 100% 4.950 3.465 N DZANK1 n/a
5 TRCN0000143719 GCAGAGTTAGATATGCACATA pLKO.1 4089 3UTR 100% 4.950 3.465 N DZANK1 n/a
6 TRCN0000121423 GCCACTTTACTGGGATGCAAT pLKO.1 3186 CDS 100% 4.950 3.465 N Dzank1 n/a
7 TRCN0000140722 GCCTTCATCACAAGAGTCGAT pLKO.1 2027 5UTR 100% 2.640 1.848 N DZANK1 n/a
8 TRCN0000143194 GCTGTTATGAATAAGCACCAT pLKO.1 3048 CDS 100% 2.640 1.848 N DZANK1 n/a
9 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 3425 3UTR 100% 4.950 2.475 Y ERAP2 n/a
10 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 3426 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011529277.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.