Transcript: Human XM_011530554.2

PREDICTED: Homo sapiens cadherin EGF LAG seven-pass G-type receptor 1 (CELSR1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CELSR1 (9620)
Length:
7652
CDS:
51..5603

Additional Resources:

NCBI RefSeq record:
XM_011530554.2
NBCI Gene record:
CELSR1 (9620)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011530554.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000273659 AGGAGGTGCAACCTGTATATA pLKO_005 6142 3UTR 100% 15.000 21.000 N CELSR1 n/a
2 TRCN0000378227 GCCAAAGAAAGCACCATTATT pLKO_005 4456 CDS 100% 15.000 10.500 N CELSR1 n/a
3 TRCN0000356765 ACTACAACAAGCCCAATATTG pLKO_005 1144 CDS 100% 13.200 9.240 N CELSR1 n/a
4 TRCN0000356766 GTCCTAAGACTGCAGTCAAAG pLKO_005 5892 3UTR 100% 10.800 7.560 N CELSR1 n/a
5 TRCN0000008239 CCAGACACAAAGGTCTTGGTT pLKO.1 5779 3UTR 100% 3.000 2.100 N CELSR1 n/a
6 TRCN0000008242 CCTGTGTCAACAGGTGGAATA pLKO.1 1531 CDS 100% 1.080 0.756 N CELSR1 n/a
7 TRCN0000273805 CCTGTGTCAACAGGTGGAATA pLKO_005 1531 CDS 100% 1.080 0.756 N CELSR1 n/a
8 TRCN0000008240 CCTGCCAAAGAAAGCACCATT pLKO.1 4453 CDS 100% 4.950 2.970 N CELSR1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011530554.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.