Transcript: Human XM_011532988.1

PREDICTED: Homo sapiens cytochrome P450 family 26 subfamily B member 1 (CYP26B1), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CYP26B1 (56603)
Length:
4117
CDS:
163..1128

Additional Resources:

NCBI RefSeq record:
XM_011532988.1
NBCI Gene record:
CYP26B1 (56603)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011532988.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000064054 CGAGCTTGATGGTTTCCAGAT pLKO.1 726 CDS 100% 4.050 5.670 N CYP26B1 n/a
2 TRCN0000430859 GCCTCAGCGTCAAGTTCTTTG pLKO_005 1043 CDS 100% 10.800 7.560 N CYP26B1 n/a
3 TRCN0000064056 CTTTGAGGTCTACCAGCAGTT pLKO.1 219 CDS 100% 4.050 2.835 N CYP26B1 n/a
4 TRCN0000064057 GAGCTGATCTTTGCGGCCTAT pLKO.1 463 CDS 100% 4.050 2.835 N CYP26B1 n/a
5 TRCN0000413471 TCAAAGACGTGAACGTGTTCG pLKO_005 806 CDS 100% 4.050 2.835 N CYP26B1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011532988.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03727 pDONR223 100% 62.6% 62.6% None 0_1ins573 n/a
2 ccsbBroad304_03727 pLX_304 0% 62.6% 62.6% V5 0_1ins573 n/a
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