Construct: ORF ccsbBroadEn_03727
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013685.1_s300c1, BRDN0000394755
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CYP26B1 (56603)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56603 | CYP26B1 | cytochrome P450 family 26 s... | NM_019885.3 | 100% | 100% | |
| 2 | human | 56603 | CYP26B1 | cytochrome P450 family 26 s... | XM_005264433.4 | 87.3% | 87.3% | (many diffs) |
| 3 | human | 56603 | CYP26B1 | cytochrome P450 family 26 s... | NM_001277742.1 | 85.3% | 85.3% | 202_203ins225 |
| 4 | human | 56603 | CYP26B1 | cytochrome P450 family 26 s... | XM_011532988.1 | 62.6% | 62.6% | 0_1ins573 |
| 5 | mouse | 232174 | Cyp26b1 | cytochrome P450, family 26,... | NM_001177713.1 | 88.9% | 96.2% | (many diffs) |
| 6 | mouse | 232174 | Cyp26b1 | cytochrome P450, family 26,... | NM_175475.3 | 88.9% | 96.2% | (many diffs) |
| 7 | mouse | 232174 | Cyp26b1 | cytochrome P450, family 26,... | XM_006505972.3 | 55.4% | 60.5% | (many diffs) |
| 8 | mouse | 232174 | Cyp26b1 | cytochrome P450, family 26,... | XM_011241300.2 | 55.4% | 60.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1605
- ORF length:
- 1536
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTAGCACCAT GCTCTTTGAG GGCTTGGATC TGGTGTCGGC GCTGGCCACC CTCGCCGCGT 121 GCCTGGTGTC CGTGACGCTG CTGCTGGCCG TGTCGCAGCA GCTGTGGCAG CTGCGCTGGG 181 CCGCCACTCG CGACAAGAGC TGCAAGCTGC CCATCCCCAA GGGATCCATG GGCTTCCCGC 241 TCATCGGAGA GACCGGCCAC TGGCTGCTGC AGGGTTCTGG CTTCCAGTCG TCGCGGAGGG 301 AGAAGTATGG CAACGTGTTC AAGACGCATT TGTTGGGGCG GCCGCTGATA CGCGTGACCG 361 GCGCGGAGAA CGTGCGCAAG ATCCTCATGG GCGAGCACCA CCTCGTGAGC ACCGAGTGGC 421 CTCGCAGCAC CCGCATGTTG CTGGGCCCCA ACACGGTGTC CAATTCCATT GGCGACATCC 481 ACCGCAACAA GCGCAAGGTC TTCTCCAAGA TCTTCAGCCA CGAGGCCCTG GAGAGTTACC 541 TGCCCAAGAT CCAGCTGGTG ATCCAGGACA CACTGCGCGC CTGGAGCAGC CACCCCGAGG 601 CCATCAACGT GTACCAGGAG GCGCAGAAGC TGACCTTCCG CATGGCCATC CGGGTGCTGC 661 TGGGCTTCAG CATCCCTGAG GAGGACCTTG GGCACCTCTT TGAGGTCTAC CAGCAGTTTG 721 TGGACAATGT CTTCTCCCTG CCTGTCGACC TGCCCTTCAG TGGCTACCGG CGGGGCATTC 781 AGGCTCGGCA GATCCTGCAG AAGGGGCTGG AGAAGGCCAT CCGGGAGAAG CTGCAGTGCA 841 CACAGGGCAA GGACTACTTG GACGCCCTGG ACCTCCTCAT TGAGAGCAGC AAGGAGCACG 901 GGAAGGAGAT GACCATGCAG GAGCTGAAGG ACGGGACCCT GGAGCTGATC TTTGCGGCCT 961 ATGCCACCAC GGCCAGCGCC AGCACCTCAC TCATCATGCA GCTGCTGAAG CACCCCACTG 1021 TGCTGGAGAA GCTGCGGGAT GAGCTGCGGG CTCATGGCAT CCTGCACAGT GGCGGCTGCC 1081 CCTGCGAGGG CACACTGCGC CTGGACACGC TCAGTGGGCT GCGCTACCTG GACTGCGTCA 1141 TCAAGGAGGT CATGCGCCTG TTCACGCCCA TTTCCGGCGG CTACCGCACT GTGCTGCAGA 1201 CCTTCGAGCT TGATGGTTTC CAGATCCCCA AAGGCTGGAG TGTCATGTAT AGCATCCGGG 1261 ACACCCATGA CACAGCGCCC GTGTTCAAAG ACGTGAACGT GTTCGACCCC GATCGCTTCA 1321 GCCAGGCGCG GAGCGAGGAC AAGGATGGCC GCTTCCATTA CCTCCCGTTC GGTGGCGGTG 1381 TCCGGACCTG CCTGGGCAAG CACCTGGCCA AGCTGTTCCT GAAGGTGCTG GCGGTGGAGC 1441 TGGCTAGCAC CAGCCGCTTT GAGCTGGCCA CACGGACCTT CCCCCGCATC ACCTTGGTCC 1501 CCGTCCTGCA CCCCGTGGAT GGCCTCAGCG TCAAGTTCTT TGGCCTGGAC TCCAACCAGA 1561 ACGAGATCCT GCCGGAGACG GAGGCCATGC TGAGCGCCAC AGTCTTGCCA ACTTTCTTGT 1621 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c