Transcript: Human XM_011533393.2

PREDICTED: Homo sapiens coiled-coil domain containing 12 (CCDC12), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CCDC12 (151903)
Length:
1424
CDS:
816..1424

Additional Resources:

NCBI RefSeq record:
XM_011533393.2
NBCI Gene record:
CCDC12 (151903)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011533393.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000365045 GAACTATGTCCCGGAGGATGA pLKO_005 1016 CDS 100% 4.050 5.670 N CCDC12 n/a
2 TRCN0000377500 ACCGGTTGCAGTGGAGGAGAA pLKO_005 1070 CDS 100% 1.350 1.890 N CCDC12 n/a
3 TRCN0000074974 CGGAACTATGTCCCGGAGGAT pLKO.1 1014 CDS 100% 0.880 0.704 N CCDC12 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011533393.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.