Transcript: Human XM_011536641.2

PREDICTED: Homo sapiens kinesin family member 26A (KIF26A), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KIF26A (26153)
Length:
5902
CDS:
73..4794

Additional Resources:

NCBI RefSeq record:
XM_011536641.2
NBCI Gene record:
KIF26A (26153)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011536641.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000247680 AGGTTCTGTTAGGTTCATATT pLKO_005 5529 3UTR 100% 13.200 18.480 N KIF26A n/a
2 TRCN0000247681 GCAGCATCAATGATGAGTTTG pLKO_005 2375 CDS 100% 10.800 7.560 N KIF26A n/a
3 TRCN0000247682 CTGCAGTTCCCAAGATGTTTG pLKO_005 416 CDS 100% 10.800 6.480 N KIF26A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011536641.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14107 pDONR223 100% 12.8% 12.7% None 1_4110del;4117G>A;4127C>G n/a
2 ccsbBroad304_14107 pLX_304 0% 12.8% 12.7% V5 1_4110del;4117G>A;4127C>G n/a
3 TRCN0000465692 CGTATACTATCCAATCCCGAATTC pLX_317 60.7% 12.8% 12.7% V5 1_4110del;4117G>A;4127C>G n/a
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