Transcript: Human XM_011537069.2

PREDICTED: Homo sapiens neuronal PAS domain protein 3 (NPAS3), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NPAS3 (64067)
Length:
6029
CDS:
62..2962

Additional Resources:

NCBI RefSeq record:
XM_011537069.2
NBCI Gene record:
NPAS3 (64067)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011537069.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000020976 CCATCATTCGACTTACAATTA pLKO.1 444 CDS 100% 13.200 18.480 N NPAS3 n/a
2 TRCN0000369372 TCCACCTAACACATCAGTAAA pLKO_005 532 CDS 100% 13.200 10.560 N NPAS3 n/a
3 TRCN0000020974 CGAGTAAATATGGACCTCAAT pLKO.1 1175 CDS 100% 4.950 3.960 N NPAS3 n/a
4 TRCN0000364578 CAGTGCCACCATAGCTATTAA pLKO_005 1399 CDS 100% 15.000 10.500 N NPAS3 n/a
5 TRCN0000427478 CTCCTACCAGCAGCGAATAAC pLKO_005 205 CDS 100% 13.200 9.240 N Npas3 n/a
6 TRCN0000364652 TGACTTATTCTTTCGTGTAAA pLKO_005 3116 3UTR 100% 13.200 9.240 N NPAS3 n/a
7 TRCN0000364580 TGCAGAAGAACGGAGGATATA pLKO_005 1365 CDS 100% 13.200 9.240 N NPAS3 n/a
8 TRCN0000369373 TGGAAAGAGACAAGCATAAAC pLKO_005 3359 3UTR 100% 13.200 9.240 N NPAS3 n/a
9 TRCN0000364654 TCGACAAGGCATCCATCATTC pLKO_005 432 CDS 100% 10.800 7.560 N NPAS3 n/a
10 TRCN0000020978 GAACCCATCAATTTCGACAAT pLKO.1 2120 CDS 100% 4.950 3.465 N NPAS3 n/a
11 TRCN0000020975 GCACATCAAATCATCAGGATA pLKO.1 997 CDS 100% 4.950 3.465 N NPAS3 n/a
12 TRCN0000096458 CCAACCAATCAGAATGTAGGA pLKO.1 243 CDS 100% 2.640 1.848 N Npas3 n/a
13 TRCN0000020977 GCTGTTAACTTCGTGGACGTT pLKO.1 2708 CDS 100% 2.640 1.848 N NPAS3 n/a
14 TRCN0000364651 GCACTAGCCATTGAAGTATTT pLKO_005 587 CDS 100% 13.200 7.920 N NPAS3 n/a
15 TRCN0000019178 CGCCAGCCAGAGCCCAGAGAA pLKO.1 13 5UTR 100% 0.000 0.000 Y SOX11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011537069.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.