Transcript: Human XM_011537177.2

PREDICTED: Homo sapiens basal body orientation factor 1 (BBOF1), transcript variant X9, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
BBOF1 (80127)
Length:
2725
CDS:
254..1639

Additional Resources:

NCBI RefSeq record:
XM_011537177.2
NBCI Gene record:
BBOF1 (80127)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011537177.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000263912 TTGCAAGAGAGTCATACTTTA pLKO_005 590 CDS 100% 13.200 10.560 N BBOF1 n/a
2 TRCN0000263915 ACAAGCTGCTTTCAATTTAAA pLKO_005 1096 CDS 100% 15.000 10.500 N BBOF1 n/a
3 TRCN0000263916 TGCAGCAACACGCAATGATAG pLKO_005 879 CDS 100% 10.800 7.560 N BBOF1 n/a
4 TRCN0000172809 GCAGATAGCACAAGCTGCTTT pLKO.1 1087 CDS 100% 4.950 3.465 N BBOF1 n/a
5 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 2402 3UTR 100% 4.950 2.475 Y ORAI2 n/a
6 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 2326 3UTR 100% 4.950 2.475 Y ERAP2 n/a
7 TRCN0000138140 GATTGAGACCATCCTGGCTAA pLKO.1 2381 3UTR 100% 4.050 2.025 Y LOC441087 n/a
8 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 2327 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011537177.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.