Transcript: Human XM_011539818.2

PREDICTED: Homo sapiens marker of proliferation Ki-67 (MKI67), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MKI67 (4288)
Length:
12226
CDS:
959..9697

Additional Resources:

NCBI RefSeq record:
XM_011539818.2
NBCI Gene record:
MKI67 (4288)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011539818.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000117959 GCGTTAAATTAGTGAGCCGTT pLKO.1 549 5UTR 100% 2.160 3.024 N MKI67 n/a
2 TRCN0000349135 GCGTTAAATTAGTGAGCCGTT pLKO_005 549 5UTR 100% 2.160 3.024 N MKI67 n/a
3 TRCN0000117961 GCCGAAGTCAACATGATATTT pLKO.1 1821 CDS 100% 15.000 10.500 N MKI67 n/a
4 TRCN0000315838 GCCGAAGTCAACATGATATTT pLKO_005 1821 CDS 100% 15.000 10.500 N MKI67 n/a
5 TRCN0000117958 GCAGCAATAGACGGCTACAAA pLKO.1 5367 CDS 100% 5.625 3.938 N MKI67 n/a
6 TRCN0000315834 GCAGCAATAGACGGCTACAAA pLKO_005 5367 CDS 100% 5.625 3.938 N MKI67 n/a
7 TRCN0000117957 CCCATTAAATACAAGCTGTTT pLKO.1 11742 3UTR 100% 4.950 3.465 N MKI67 n/a
8 TRCN0000315835 CCCATTAAATACAAGCTGTTT pLKO_005 11742 3UTR 100% 4.950 3.465 N MKI67 n/a
9 TRCN0000117960 GCGAAGGTTCTCATGCAGAAT pLKO.1 9461 CDS 100% 4.950 3.465 N MKI67 n/a
10 TRCN0000315833 GCGAAGGTTCTCATGCAGAAT pLKO_005 9461 CDS 100% 4.950 3.465 N MKI67 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011539818.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.