Transcript: Human XM_011540099.1

PREDICTED: Homo sapiens annexin A8 (ANXA8), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ANXA8 (653145)
Length:
1943
CDS:
16..1179

Additional Resources:

NCBI RefSeq record:
XM_011540099.1
NBCI Gene record:
ANXA8 (653145)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011540099.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000256102 ATGTACCCGCCATACAGATAC pLKO_005 649 CDS 100% 10.800 6.480 N ANXA8L1 n/a
2 TRCN0000256103 AGAACCAGCTGCGGGAGATAA pLKO_005 752 CDS 100% 13.200 6.600 Y ANXA8L1 n/a
3 TRCN0000262794 GAACCAGCTGCGGGAGATAAT pLKO_005 753 CDS 100% 13.200 6.600 Y ANXA8 n/a
4 TRCN0000262793 TGGGACTGATGAGATGAAATT pLKO_005 960 CDS 100% 13.200 6.600 Y ANXA8 n/a
5 TRCN0000262792 AGGCGTATGAGGAAGACTATG pLKO_005 776 CDS 100% 10.800 5.400 Y ANXA8 n/a
6 TRCN0000437273 AGGCTCATTGTGGCCCTTATG pLKO_005 631 CDS 100% 10.800 5.400 Y ANXA8L1 n/a
7 TRCN0000055945 CGTGGGACTGATGAGATGAAA pLKO.1 958 CDS 100% 5.625 2.813 Y ANXA8L1 n/a
8 TRCN0000055947 GACCCTCTACAAAGCCATGAA pLKO.1 462 CDS 100% 4.950 2.475 Y ANXA8L1 n/a
9 TRCN0000055943 CGGGAGATAATGAAGGCGTAT pLKO.1 763 CDS 100% 4.050 2.025 Y ANXA8L1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011540099.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05724 pDONR223 98.6% 56.9% 54.8% None (many diffs) n/a
2 ccsbBroad304_05724 pLX_304 0% 56.9% 54.8% V5 (not translated due to prior stop codon) (many diffs) n/a
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