Transcript: Human XM_011542897.2

PREDICTED: Homo sapiens sodium voltage-gated channel beta subunit 3 (SCN3B), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SCN3B (55800)
Length:
1337
CDS:
404..1051

Additional Resources:

NCBI RefSeq record:
XM_011542897.2
NBCI Gene record:
SCN3B (55800)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011542897.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000044633 GCGGTAAAGATTTCCTTATTT pLKO.1 606 CDS 100% 15.000 21.000 N SCN3B n/a
2 TRCN0000438112 ACGTCACTCTGAACGACTCTG pLKO_005 729 CDS 100% 4.050 5.670 N SCN3B n/a
3 TRCN0000044637 CCTTATTTACGAGTATCGGAA pLKO.1 619 CDS 100% 2.640 3.696 N SCN3B n/a
4 TRCN0000044634 GCTGCTCATCGAGATGATATA pLKO.1 919 CDS 100% 13.200 9.240 N SCN3B n/a
5 TRCN0000044635 CCCATCTGAGAACAAGGAGAA pLKO.1 1006 CDS 100% 4.050 2.835 N SCN3B n/a
6 TRCN0000069248 GCGGTAAAGATTTCCTTATAT pLKO.1 606 CDS 100% 15.000 21.000 N Scn3b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011542897.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03656 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03656 pLX_304 0% 100% 100% V5 n/a
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