Construct: ORF ccsbBroad304_03656

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011837.1_s304c1, BRDN0000401380
Derived from:
ccsbBroadEn_03656
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCN3B (55800)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03656
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55800 SCN3B sodium voltage-gated channe... NM_001040151.1 100% 100%
2 human 55800 SCN3B sodium voltage-gated channe... NM_018400.3 100% 100%
3 human 55800 SCN3B sodium voltage-gated channe... XM_011542897.2 100% 100%
4 mouse 235281 Scn3b sodium channel, voltage-gat... NM_001083917.1 89.4% 97.6% (many diffs)
5 mouse 235281 Scn3b sodium channel, voltage-gat... NM_178227.4 89.4% 97.6% (many diffs)
6 mouse 235281 Scn3b sodium channel, voltage-gat... XM_006510234.1 89.4% 97.6% (many diffs)
7 mouse 235281 Scn3b sodium channel, voltage-gat... NM_001286614.1 72.7% 80.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
714
ORF length:
645
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gcctgccttc aatagattgt ttcccctggc ttctctcgtg cttatctact
121gggtcagtgt ctgcttccct gtgtgtgtgg aagtgccctc ggagacggag gccgtgcagg
181gcaaccccat gaagctgcgc tgcatctcct gcatgaagag agaggaggtg gaggccacca
241cggtggtgga atggttctac aggcccgagg gcggtaaaga tttccttatt tacgagtatc
301ggaatggcca ccaggaggtg gagagcccct ttcaggggcg cctgcagtgg aatggcagca
361aggacctgca ggacgtgtcc atcactgtgc tcaacgtcac tctgaacgac tctggcctct
421acacctgcaa tgtgtcccgg gagtttgagt ttgaggcgca tcggcccttt gtgaagacga
481cgcggctgat ccccctaaga gtcaccgagg aggctggaga ggacttcacc tctgtggtct
541cagaaatcat gatgtacatc cttctggtct tcctcacctt gtggctgctc atcgagatga
601tatattgcta cagaaaggtc tcaaaagccg aagaggcagc ccaagaaaac gcgtctgact
661accttgccat cccatctgag aacaaggaga actctgcggt accagtggag gaattgccaa
721ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
781cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)