Transcript: Human XM_011543954.2

PREDICTED: Homo sapiens ubiquitin like modifier activating enzyme 1 (UBA1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
UBA1 (7317)
Length:
3619
CDS:
202..3420

Additional Resources:

NCBI RefSeq record:
XM_011543954.2
NBCI Gene record:
UBA1 (7317)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011543954.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000004001 CTCCAACTTCTCCGACTACAT pLKO.1 1083 CDS 100% 4.950 6.930 N UBA1 n/a
2 TRCN0000277770 CTCCAACTTCTCCGACTACAT pLKO_005 1083 CDS 100% 4.950 6.930 N UBA1 n/a
3 TRCN0000004002 GCACAAATTAGAGATCACCAT pLKO.1 3189 CDS 100% 2.640 3.696 N UBA1 n/a
4 TRCN0000277719 GCACAAATTAGAGATCACCAT pLKO_005 3189 CDS 100% 2.640 3.696 N UBA1 n/a
5 TRCN0000004003 CCTGGGATGTCACGAAGTTAA pLKO.1 1805 CDS 100% 13.200 9.240 N UBA1 n/a
6 TRCN0000277718 CCTGGGATGTCACGAAGTTAA pLKO_005 1805 CDS 100% 13.200 9.240 N UBA1 n/a
7 TRCN0000004000 CCACTGCCTTCTACCTTGTTT pLKO.1 3563 3UTR 100% 5.625 3.938 N UBA1 n/a
8 TRCN0000277769 CCACTGCCTTCTACCTTGTTT pLKO_005 3563 3UTR 100% 5.625 3.938 N UBA1 n/a
9 TRCN0000004004 GTGCTATGGTTTCTATGGTTA pLKO.1 896 CDS 100% 4.950 3.465 N UBA1 n/a
10 TRCN0000277771 GTGCTATGGTTTCTATGGTTA pLKO_005 896 CDS 100% 4.950 3.465 N UBA1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011543954.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.