Transcript: Human XM_017000036.2

PREDICTED: Homo sapiens ubiquitination factor E4B (UBE4B), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
UBE4B (10277)
Length:
5150
CDS:
701..3874

Additional Resources:

NCBI RefSeq record:
XM_017000036.2
NBCI Gene record:
UBE4B (10277)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017000036.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000007546 CCGATATAACACTGCCTTTAA pLKO.1 2553 CDS 100% 13.200 18.480 N UBE4B n/a
2 TRCN0000338295 GCCTAGTTGCCGTCGCTATAT pLKO_005 2275 CDS 100% 13.200 18.480 N UBE4B n/a
3 TRCN0000007549 CGCTATCATATTAGCACCATT pLKO.1 2942 CDS 100% 4.950 6.930 N UBE4B n/a
4 TRCN0000007547 CGCCCTCTAATAGCCTTGAAA pLKO.1 538 5UTR 100% 5.625 4.500 N UBE4B n/a
5 TRCN0000338354 GAAGTGTTCAAGCAGATATTT pLKO_005 1505 CDS 100% 15.000 10.500 N UBE4B n/a
6 TRCN0000338294 TGGACCAACTGACGGATATTT pLKO_005 3420 CDS 100% 15.000 10.500 N UBE4B n/a
7 TRCN0000007548 GCAGGGATCAAATCCACAATA pLKO.1 3542 CDS 100% 13.200 9.240 N UBE4B n/a
8 TRCN0000350907 GCAGGGATCAAATCCACAATA pLKO_005 3542 CDS 100% 13.200 9.240 N UBE4B n/a
9 TRCN0000338296 TAATCCAATATCCGTTGATTT pLKO_005 4223 3UTR 100% 13.200 9.240 N UBE4B n/a
10 TRCN0000007545 CCCTACTTAACATACTTGAAT pLKO.1 4955 3UTR 100% 5.625 3.938 N UBE4B n/a
11 TRCN0000087343 TGGTCTCAATGTCCACAACAT pLKO.1 434 5UTR 100% 4.950 3.465 N LOC436441 n/a
12 TRCN0000087346 TCTTGGTCTCAATGTCCACAA pLKO.1 431 5UTR 100% 4.050 2.835 N LOC436441 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017000036.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.