Transcript: Human XM_017003640.1

PREDICTED: Homo sapiens autophagy related 4B cysteine peptidase (ATG4B), transcript variant X7, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ATG4B (23192)
Length:
1714
CDS:
388..1347

Additional Resources:

NCBI RefSeq record:
XM_017003640.1
NBCI Gene record:
ATG4B (23192)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017003640.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000365104 CATTCACCAGATAGCGCAAAT pLKO_005 537 CDS 100% 10.800 15.120 N ATG4B n/a
2 TRCN0000370106 CAGCGTCCTCAACGCATTCAT pLKO_005 492 CDS 100% 5.625 7.875 N ATG4B n/a
3 TRCN0000073798 CCGTTTGGATACTGGGTAGAA pLKO.1 85 5UTR 100% 4.950 6.930 N ATG4B n/a
4 TRCN0000365051 CCTGAACCTGTCCCTAGATTC pLKO_005 1257 CDS 100% 10.800 14.040 N ATG4B n/a
5 TRCN0000365106 GTGGTTGGTTTGGAATTAAAG pLKO_005 1674 3UTR 100% 13.200 9.240 N ATG4B n/a
6 TRCN0000365107 GGTGTGGACAGATGATCTTTG pLKO_005 395 CDS 100% 10.800 7.560 N ATG4B n/a
7 TRCN0000365105 TGATGTGGCATCTAGACTTTG pLKO_005 143 5UTR 100% 10.800 7.560 N ATG4B n/a
8 TRCN0000370105 GAAGCTTGCTGTCTTCGATAC pLKO_005 624 CDS 100% 6.000 4.200 N ATG4B n/a
9 TRCN0000073799 CGGTGTGGACAGATGATCTTT pLKO.1 394 CDS 100% 5.625 3.938 N ATG4B n/a
10 TRCN0000073801 CGGTTTGCTGAGTTTGAAGAT pLKO.1 45 5UTR 100% 4.950 3.465 N ATG4B n/a
11 TRCN0000073800 GAAAGATTCTTCGACTCAGAA pLKO.1 1297 CDS 100% 4.950 3.465 N ATG4B n/a
12 TRCN0000073802 CACTACTTCATCGGCTACGTT pLKO.1 955 CDS 100% 3.000 2.100 N ATG4B n/a
13 TRCN0000030943 CCCATGTTTGAGCTGGTGGAA pLKO.1 1204 CDS 100% 2.640 1.848 N Atg4b n/a
14 TRCN0000308684 CCCATGTTTGAGCTGGTGGAA pLKO_005 1204 CDS 100% 2.640 1.848 N Atg4b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017003640.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.