Transcript: Human XM_017004085.2

PREDICTED: Homo sapiens AF4/FMR2 family member 3 (AFF3), transcript variant X12, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
AFF3 (3899)
Length:
12103
CDS:
5659..8343

Additional Resources:

NCBI RefSeq record:
XM_017004085.2
NBCI Gene record:
AFF3 (3899)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017004085.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000108068 GCTAAACGAATGAAGCATAAA pLKO.1 7612 CDS 100% 13.200 10.560 N AFF3 n/a
2 TRCN0000108065 CGGTGTAATATGTGGTGCAAT pLKO.1 9874 3UTR 100% 4.950 3.960 N AFF3 n/a
3 TRCN0000422072 TGAAGCAGCATTGTCGTTTAT pLKO_005 7677 CDS 100% 13.200 9.240 N AFF3 n/a
4 TRCN0000086610 GCAGCTGGATAAATGGCTAAA pLKO.1 6060 CDS 100% 10.800 7.560 N Aff3 n/a
5 TRCN0000108066 CCACGCTGTAAAGTATTCAAA pLKO.1 7905 CDS 100% 5.625 3.938 N AFF3 n/a
6 TRCN0000086611 GCTGGATAAATGGCTAAACAA pLKO.1 6063 CDS 100% 5.625 3.938 N Aff3 n/a
7 TRCN0000140719 GATCACTTGAGGTCAGGAGTT pLKO.1 2362 5UTR 100% 4.050 2.025 Y P3H4 n/a
8 TRCN0000165299 GATCACTTGAGGTCAGGAGTT pLKO.1 2362 5UTR 100% 4.050 2.025 Y ORAI2 n/a
9 TRCN0000352971 GATCACTTGAGGTCAGGAGTT pLKO_005 2362 5UTR 100% 4.050 2.025 Y P3H4 n/a
10 TRCN0000166364 CACACACACACACACACACAA pLKO.1 8635 3UTR 100% 4.950 2.475 Y KAAG1 n/a
11 TRCN0000173087 CAGATGAGGAAACTGAGGCTT pLKO.1 501 5UTR 100% 2.640 1.320 Y FLJ45966 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017004085.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.