Transcript: Human XM_017007138.1

PREDICTED: Homo sapiens calcium voltage-gated channel subunit alpha1 D (CACNA1D), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CACNA1D (776)
Length:
8498
CDS:
16..6753

Additional Resources:

NCBI RefSeq record:
XM_017007138.1
NBCI Gene record:
CACNA1D (776)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017007138.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000236435 ATATCCATGGGTCCTAATAAT pLKO_005 7594 3UTR 100% 15.000 21.000 N CACNA1D n/a
2 TRCN0000236433 GATTATAGCGTATGGATTATT pLKO_005 663 CDS 100% 15.000 21.000 N CACNA1D n/a
3 TRCN0000044693 GCGTGCTATATCGTGTGATTT pLKO.1 5232 CDS 100% 13.200 18.480 N CACNA1D n/a
4 TRCN0000236434 TTGCCCTACAGGCGGGATTAA pLKO_005 5180 CDS 100% 13.200 18.480 N CACNA1D n/a
5 TRCN0000044696 CCTGCGAAGAACACCACAATT pLKO.1 5161 CDS 100% 13.200 9.240 N CACNA1D n/a
6 TRCN0000236432 GAGATAACAACCAGATCAATA pLKO_005 4400 CDS 100% 13.200 9.240 N CACNA1D n/a
7 TRCN0000236436 TTGGGCCTCCAAGCATATTTC pLKO_005 1915 CDS 100% 13.200 9.240 N CACNA1D n/a
8 TRCN0000044697 CCTGTTGAAGATGACAACTTT pLKO.1 2985 CDS 100% 5.625 3.938 N CACNA1D n/a
9 TRCN0000044695 CCAAGCAAACTGTCCTGTCTT pLKO.1 263 CDS 100% 4.950 3.465 N CACNA1D n/a
10 TRCN0000068878 CCTGCATTAGTATAGTGGAAT pLKO.1 479 CDS 100% 4.950 3.465 N Cacna1d n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017007138.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.