Transcript: Human XM_017009682.2

PREDICTED: Homo sapiens Ras protein specific guanine nucleotide releasing factor 2 (RASGRF2), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RASGRF2 (5924)
Length:
7832
CDS:
18..3446

Additional Resources:

NCBI RefSeq record:
XM_017009682.2
NBCI Gene record:
RASGRF2 (5924)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017009682.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000072969 GCGGTTTCTTAGTATTGATTT pLKO.1 1694 CDS 100% 13.200 18.480 N RASGRF2 n/a
2 TRCN0000072971 GCTCTAATGGACAAACTTCAA pLKO.1 3093 CDS 100% 4.950 6.930 N RASGRF2 n/a
3 TRCN0000417390 GTGGACAATATACGATGTAAT pLKO_005 1491 CDS 100% 13.200 10.560 N RASGRF2 n/a
4 TRCN0000072970 CCAGACATCAAGAAGATTAAA pLKO.1 342 CDS 100% 15.000 10.500 N RASGRF2 n/a
5 TRCN0000415001 TGATTGAGAGGGAAGTATTAA pLKO_005 142 CDS 100% 15.000 10.500 N RASGRF2 n/a
6 TRCN0000426779 GAAGGTGAAAGATGGCTATTT pLKO_005 3645 3UTR 100% 13.200 9.240 N RASGRF2 n/a
7 TRCN0000435047 GTGCCAACGCCATCGAGAAAT pLKO_005 2941 CDS 100% 13.200 9.240 N RASGRF2 n/a
8 TRCN0000435863 TAGATGAAGATACGCTATATG pLKO_005 3388 CDS 100% 13.200 9.240 N RASGRF2 n/a
9 TRCN0000072968 GCTCCTTTCTCCACCAAAGAA pLKO.1 3544 3UTR 100% 5.625 3.938 N RASGRF2 n/a
10 TRCN0000165205 GCCTCAGTTTCCTCATCTGTA pLKO.1 7468 3UTR 100% 4.950 2.475 Y YIF1B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017009682.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.