Transcript: Human XM_017010058.2

PREDICTED: Homo sapiens CCR4-NOT transcription complex subunit 8 (CNOT8), transcript variant X14, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CNOT8 (9337)
Length:
2208
CDS:
469..855

Additional Resources:

NCBI RefSeq record:
XM_017010058.2
NBCI Gene record:
CNOT8 (9337)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017010058.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000329861 GTGCGACCAATTGGTGAATTT pLKO_005 280 5UTR 100% 13.200 18.480 N CNOT8 n/a
2 TRCN0000013411 CCTGGCGATTATCAACAACAT pLKO.1 825 CDS 100% 4.950 6.930 N CNOT8 n/a
3 TRCN0000013408 CCACTTCTCTACTCCATTATT pLKO.1 1735 3UTR 100% 15.000 12.000 N CNOT8 n/a
4 TRCN0000013410 GCTGGGCCTTACATTCACAAA pLKO.1 366 5UTR 100% 4.950 3.960 N CNOT8 n/a
5 TRCN0000329933 AGTCTGAAACAAAGTAGTAAA pLKO_005 1160 3UTR 100% 13.200 9.240 N CNOT8 n/a
6 TRCN0000329854 ATGAGCATCCTGGCGATTATC pLKO_005 817 CDS 100% 13.200 9.240 N CNOT8 n/a
7 TRCN0000013412 GCTGACAGGAATGGCTTTCTT pLKO.1 672 CDS 100% 5.625 3.938 N CNOT8 n/a
8 TRCN0000329931 GCTGACAGGAATGGCTTTCTT pLKO_005 672 CDS 100% 5.625 3.938 N CNOT8 n/a
9 TRCN0000013409 CCCATCCATTTATGATGTGAA pLKO.1 543 CDS 100% 4.950 3.465 N CNOT8 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017010058.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02143 pDONR223 100% 43.8% 43.8% None 0_1ins492 n/a
2 ccsbBroad304_02143 pLX_304 0% 43.8% 43.8% V5 0_1ins492 n/a
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