Transcript: Human XM_017011197.1

PREDICTED: Homo sapiens SIM bHLH transcription factor 1 (SIM1), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SIM1 (6492)
Length:
8168
CDS:
516..2816

Additional Resources:

NCBI RefSeq record:
XM_017011197.1
NBCI Gene record:
SIM1 (6492)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017011197.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000416133 GTATCGTCAGCGTCAACTATG pLKO_005 1486 CDS 100% 10.800 15.120 N SIM1 n/a
2 TRCN0000413175 TTGGCTCTCACCGGCAGTATT pLKO_005 2611 CDS 100% 13.200 10.560 N SIM1 n/a
3 TRCN0000015070 GCTTACACATTAACTGGATAT pLKO.1 2643 CDS 100% 10.800 8.640 N SIM1 n/a
4 TRCN0000015069 CCGCACTATCTCGGATAAGTA pLKO.1 2473 CDS 100% 5.625 3.938 N SIM1 n/a
5 TRCN0000015071 CCTCACAGACACAGAATACAA pLKO.1 1508 CDS 100% 5.625 3.938 N SIM1 n/a
6 TRCN0000015068 CCACAGATTGTTAGAGAGTAT pLKO.1 2898 3UTR 100% 4.950 3.465 N SIM1 n/a
7 TRCN0000015072 ACTGGCTAAATTACTGCCTTT pLKO.1 581 CDS 100% 4.050 2.835 N SIM1 n/a
8 TRCN0000166364 CACACACACACACACACACAA pLKO.1 7468 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017011197.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.