Transcript: Human XM_017011310.1

PREDICTED: Homo sapiens zinc finger DHHC-type containing 14 (ZDHHC14), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZDHHC14 (79683)
Length:
1897
CDS:
129..1523

Additional Resources:

NCBI RefSeq record:
XM_017011310.1
NBCI Gene record:
ZDHHC14 (79683)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017011310.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000230964 CCAGACCGTGAAACTTAAATA pLKO_005 659 CDS 100% 15.000 21.000 N LOC730077 n/a
2 TRCN0000437088 ATCGCAAACGGCACCAGTTCA pLKO_005 591 CDS 100% 4.950 6.930 N ZDHHC14 n/a
3 TRCN0000418054 TTCGTTATCACCCACGTCATT pLKO_005 861 CDS 100% 4.950 6.930 N ZDHHC14 n/a
4 TRCN0000230965 TTTGTGATAACTGCGTAGAAC pLKO_005 730 CDS 100% 4.950 6.930 N LOC730077 n/a
5 TRCN0000230963 CCGATCTGGAAAGGCAAATAG pLKO_005 568 CDS 100% 13.200 9.240 N LOC730077 n/a
6 TRCN0000230966 TCGTTATCACCCACGTCATTC pLKO_005 862 CDS 100% 10.800 7.560 N LOC730077 n/a
7 TRCN0000416948 AGGATTCCACACCTACTTGAT pLKO_005 989 CDS 100% 4.950 3.465 N ZDHHC14 n/a
8 TRCN0000148316 CAGGATTCCTAAATGCCCTTA pLKO.1 898 CDS 100% 4.050 2.835 N ZDHHC14 n/a
9 TRCN0000127618 CCAGACAACAAATGAGGACAT pLKO.1 1019 CDS 100% 4.050 2.835 N ZDHHC14 n/a
10 TRCN0000183485 GCTACGGAAATATCTTTACCA pLKO.1 1090 CDS 100% 3.000 2.100 N ZDHHC14 n/a
11 TRCN0000218230 AGGATTCCTAAATGCCCTTAA pLKO_005 899 CDS 100% 10.800 6.480 N LOC730077 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017011310.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.