Transcript: Human XM_017013622.2

PREDICTED: Homo sapiens cAMP-dependent protein kinase inhibitor alpha (PKIA), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PKIA (5569)
Length:
3757
CDS:
81..311

Additional Resources:

NCBI RefSeq record:
XM_017013622.2
NBCI Gene record:
PKIA (5569)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017013622.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000378126 GCTTGTGTTTGGGCGTCATTT pLKO_005 527 3UTR 100% 13.200 18.480 N PKIA n/a
2 TRCN0000355855 CTAATTGCGAAGGGTTGATTG pLKO_005 667 3UTR 100% 10.800 15.120 N PKIA n/a
3 TRCN0000321060 AGTGGCAACAGCAATGAATTA pLKO_005 174 CDS 100% 13.200 9.240 N Pkia n/a
4 TRCN0000355921 GAAATTAGCAGGTCTTGATAT pLKO_005 200 CDS 100% 13.200 9.240 N PKIA n/a
5 TRCN0000421866 GCAATGAATTAGCCTTGAAAT pLKO_005 184 CDS 100% 13.200 9.240 N PKIA n/a
6 TRCN0000427329 ACGAAGTTCTACAGAACAAAG pLKO_005 251 CDS 100% 10.800 7.560 N PKIA n/a
7 TRCN0000415787 AGAAATGCAATACATGATATC pLKO_005 138 CDS 100% 10.800 7.560 N PKIA n/a
8 TRCN0000002808 CAAGTGGCAACAGCAATGAAT pLKO.1 172 CDS 100% 5.625 3.938 N PKIA n/a
9 TRCN0000002809 GCTCCGACCTAGATGATGATT pLKO.1 598 3UTR 100% 5.625 3.938 N PKIA n/a
10 TRCN0000002807 TGAAATTAGCAGGTCTTGATA pLKO.1 199 CDS 100% 5.625 3.938 N PKIA n/a
11 TRCN0000002805 GAAGAAGATGCACAACGAAGT pLKO.1 237 CDS 100% 4.050 2.835 N PKIA n/a
12 TRCN0000012467 GAACAGGTAGAAGAAATGCAA pLKO.1 127 CDS 100% 3.000 2.100 N Pkia n/a
13 TRCN0000320986 GAACAGGTAGAAGAAATGCAA pLKO_005 127 CDS 100% 3.000 2.100 N Pkia n/a
14 TRCN0000002806 GCAAGTGGCAACAGCAATGAA pLKO.1 171 CDS 100% 5.625 3.375 N PKIA n/a
15 TRCN0000012465 GCAATACATGATATCCTGGTT pLKO.1 144 CDS 100% 2.640 1.584 N Pkia n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017013622.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.