Transcript: Human XM_017013910.2

PREDICTED: Homo sapiens NudC domain containing 1 (NUDCD1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NUDCD1 (84955)
Length:
4010
CDS:
431..1921

Additional Resources:

NCBI RefSeq record:
XM_017013910.2
NBCI Gene record:
NUDCD1 (84955)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017013910.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000330196 GTGTACTCTGTTCGTTGATTA pLKO_005 2251 3UTR 100% 13.200 18.480 N NUDCD1 n/a
2 TRCN0000183000 CCACTGTACTTTACAACAGAA pLKO.1 1749 CDS 100% 4.950 6.930 N NUDCD1 n/a
3 TRCN0000330258 CCACTGTACTTTACAACAGAA pLKO_005 1749 CDS 100% 4.950 6.930 N NUDCD1 n/a
4 TRCN0000148143 GCTTGGAGATTTCCTTGATTA pLKO.1 1197 CDS 100% 13.200 9.240 N NUDCD1 n/a
5 TRCN0000330193 GCTTGGAGATTTCCTTGATTA pLKO_005 1197 CDS 100% 13.200 9.240 N NUDCD1 n/a
6 TRCN0000149900 CACTCCAGCAAACAAGATGAT pLKO.1 1574 CDS 100% 4.950 3.465 N NUDCD1 n/a
7 TRCN0000330194 CACTCCAGCAAACAAGATGAT pLKO_005 1574 CDS 100% 4.950 3.465 N NUDCD1 n/a
8 TRCN0000150191 GCTAGGTAGAAAGTTAGGAAA pLKO.1 3307 3UTR 100% 4.950 3.465 N NUDCD1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017013910.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12893 pDONR223 100% 99.7% 99.1% None (many diffs) n/a
2 ccsbBroad304_12893 pLX_304 0% 99.7% 99.1% V5 (many diffs) n/a
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