Construct: ORF ccsbBroadEn_12893
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008912.1_s300c1, BRDN0000456503
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NUDCD1 (84955)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84955 | NUDCD1 | NudC domain containing 1 | XM_017013910.2 | 99.7% | 99.1% | (many diffs) |
| 2 | human | 84955 | NUDCD1 | NudC domain containing 1 | XM_017013911.1 | 99.7% | 99.1% | (many diffs) |
| 3 | human | 84955 | NUDCD1 | NudC domain containing 1 | NM_001128211.1 | 89.1% | 88% | (many diffs) |
| 4 | human | 84955 | NUDCD1 | NudC domain containing 1 | NM_032869.4 | 84.7% | 83.7% | (many diffs) |
| 5 | mouse | 67429 | Nudcd1 | NudC domain containing 1 | NM_001113554.1 | 75.5% | 74.9% | (many diffs) |
| 6 | mouse | 67429 | Nudcd1 | NudC domain containing 1 | NM_026149.4 | 75.4% | 74.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1557
- ORF length:
- 1488
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTATAACCAG GACACTGCCT TAGGAAAACC ACGAGAGGTG TTTCGACTTC 121 CTACAGATTT GACAGCATGT GACAACCGTC TTTGTGCATC TATCCATTTC TCATCTTCTA 181 CCTGGGTTAC CTTGTCAGAT GGAACTGGAA GATTGTATGT CATTGGAACA GGTGAACGTG 241 GAAATAGCGC TTCTGAAAAA TGGGAGATTA TGTTTAATGA AGAACTTGGG GATCCTTTTA 301 TTATAATTCA CAGTATCTCA CTGCTAAATG CTGAAGAACA TTCTATAGCT ACCCTACTTC 361 TTCGAATAGA GAAAGAGGAA TTGGATATGA AAGGAAGTGG TTTCTATGTT TCTCTGGAGT 421 GGGTCACTAT CAGTAAGAAA AATCAAGATA ATAAAAAATA TGAAATTATT AAGCGTGATA 481 TTCTCCGTGG AAAGTCAGTG CCACATTATG CTGCTATTGA GCCTGATGGA AATGGTCTAA 541 TGATTGTATC CTACAAGTCT TTCACATTTG TTCAGGCTGG TCAAGATCTT GAAGAAAATA 601 TGGATGAAGA CGTATCAGAG AAAATCAAAG AACCTCTGTA TTACTGGCAA CAGACTGAAG 661 ATGATTTGAC AGTAACCATA CGGCTTCCAG AAGACAGTAC TAAGGAGGAC ATTCAAATAC 721 AGTTTTTGCC TGATCACATC AACATTGTAC TGAAGGATCA CCAGTTTTTA GAAGGAAAAC 781 TCTATTCATC TATTGATCAT GAAAGCAGTA CATGGATAAT TAAAGAGAGT AATAGCTTGG 841 AGATTTCCTT GATTAAGAAG AATGAAGGAC TGACCTGGCC AGAGCTAGTA ATTGGAGATA 901 AACAAGGGGA ACTTATAAGA GATTCAGCCC AGTGTGCTGC AATAGCTGAA CGTTTGATGC 961 ATTTGACCTC TGAAGAACTG AATCCACATC CAGATAAAGA AAAACCACCT TGCAATGCTC 1021 AAGAGTTAGA AGAATGTGAT ATTTTCTTTG AAGAGAGCTC CAGTTTATGC AGATTTGATG 1081 GCAGTACATT AAAAACTACT CATGTGGTGA ATCTTGGAAG CAACCAGTAC CTTTTCTCTG 1141 TCATAGTGGA TCCTAAAGAA ATGCCCTGCT TCTGTTTGCG CCATGATGTT GATGCCCTAC 1201 TCTGGCAACC ACACTCCAGC AAACAAGATG ATATGTGGGA GCACATCGCA ACTTTCAATG 1261 CTTTAGGCTA TGTCCAAGCA TCAAAGAGAG ACAAAAAATT TTTTGCCTGT GCTCCAAATT 1321 ACTCGTATGC AGCCCTTTGT GAGTGCCTTC GTCGAGTATT CATCTATCGT CAGCCTGCTC 1381 CCATGTCCAC TGTACTTTAC AACAGAAAGG AAGGCAGGCA AGTAGGACAG GTTGCTAAGC 1441 AGCAAGTAGC AAGCCTAGAA ACCAATGATC CTATTTTAGG ATTTCAGGCA ACAAATGAGA 1501 GATTATTTGT TCTTACTACC AAAAACCTCT TTTTAATAAA AGTAAATACA GAGAATTTGC 1561 CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg 1621 aac