Transcript: Human XM_017015543.1

PREDICTED: Homo sapiens CUGBP Elav-like family member 2 (CELF2), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CELF2 (10659)
Length:
9057
CDS:
17..1594

Additional Resources:

NCBI RefSeq record:
XM_017015543.1
NBCI Gene record:
CELF2 (10659)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017015543.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000098679 CAACAAGATGAACGGAGCTTT pLKO.1 103 CDS 100% 4.950 6.930 N Celf2 n/a
2 TRCN0000074615 CCACTGTTGGACTGAATAATA pLKO.1 1077 CDS 100% 15.000 12.000 N CELF2 n/a
3 TRCN0000236111 CTCGTTCCTGACAGAATTAAC pLKO_005 74 CDS 100% 13.200 10.560 N CELF2 n/a
4 TRCN0000074617 GATCGGCATGAAACGCTTGAA pLKO.1 1531 CDS 100% 4.950 3.960 N CELF2 n/a
5 TRCN0000236110 AGAATGCACTGCACAATATTA pLKO_005 336 CDS 100% 15.000 10.500 N CELF2 n/a
6 TRCN0000176651 CGTTCCTGATAAGTGAATAAA pLKO.1 8737 3UTR 100% 15.000 10.500 N Celf2 n/a
7 TRCN0000236113 TTTGACCACACAGGTTAATTT pLKO_005 7194 3UTR 100% 15.000 10.500 N CELF2 n/a
8 TRCN0000074616 CCCAGAATGCACTGCACAATA pLKO.1 333 CDS 100% 13.200 9.240 N CELF2 n/a
9 TRCN0000236109 GGTTGTTGTTTCGTAACATTT pLKO_005 287 CDS 100% 13.200 9.240 N CELF2 n/a
10 TRCN0000236112 TAGGAATGGTATCGAAGAAAT pLKO_005 444 CDS 100% 13.200 9.240 N CELF2 n/a
11 TRCN0000074613 GCTCACTTTCTCATTAAGATA pLKO.1 3522 3UTR 100% 5.625 3.938 N CELF2 n/a
12 TRCN0000074614 CGCAGAGTAAAGGTTGTTGTT pLKO.1 276 CDS 100% 4.950 3.465 N CELF2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017015543.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.