Transcript: Human XM_017016797.1

PREDICTED: Homo sapiens actin filament associated protein 1 like 2 (AFAP1L2), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
AFAP1L2 (84632)
Length:
3568
CDS:
46..2703

Additional Resources:

NCBI RefSeq record:
XM_017016797.1
NBCI Gene record:
AFAP1L2 (84632)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017016797.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000436141 ACCTGTCGGCTTCAGAGTATG pLKO_005 1031 CDS 100% 10.800 15.120 N AFAP1L2 n/a
2 TRCN0000180229 CCGATGAATGCCGATGTGATT pLKO.1 856 CDS 100% 4.950 6.930 N AFAP1L2 n/a
3 TRCN0000181175 CGAGACATCCAGTTACCTGAA pLKO.1 1191 CDS 100% 4.050 5.670 N AFAP1L2 n/a
4 TRCN0000434386 ACAGGCTTCTGTGCTACAAAT pLKO_005 731 CDS 100% 13.200 10.560 N AFAP1L2 n/a
5 TRCN0000422322 GCCGATAGGGTCTCCTGTATT pLKO_005 1513 CDS 100% 13.200 10.560 N AFAP1L2 n/a
6 TRCN0000414860 CTGATGAGGAGTACATTTATA pLKO_005 194 CDS 100% 15.000 10.500 N AFAP1L2 n/a
7 TRCN0000424646 ACTGCCAGAAACCAGATATAG pLKO_005 1001 CDS 100% 13.200 9.240 N AFAP1L2 n/a
8 TRCN0000429112 AGTCTCCAGAGGGCTACTATG pLKO_005 398 CDS 100% 10.800 7.560 N AFAP1L2 n/a
9 TRCN0000416892 CCTCAAACTGAGCAACCTAAT pLKO_005 1119 CDS 100% 10.800 7.560 N AFAP1L2 n/a
10 TRCN0000436221 GAAAGAGAAACGGGAGCTAAA pLKO_005 2196 CDS 100% 10.800 7.560 N AFAP1L2 n/a
11 TRCN0000425157 CAGAAACCAAAGACGTCAAGA pLKO_005 1082 CDS 100% 4.950 3.465 N AFAP1L2 n/a
12 TRCN0000149256 GATGACCCAAATGAGAGAGAA pLKO.1 1705 CDS 100% 4.950 3.465 N AFAP1L2 n/a
13 TRCN0000423611 GGAGAAGCAAGTGCGGAAGAA pLKO_005 813 CDS 100% 4.950 3.465 N AFAP1L2 n/a
14 TRCN0000146478 CAAGATTCTTGACCAGGAGAA pLKO.1 99 CDS 100% 4.050 2.835 N AFAP1L2 n/a
15 TRCN0000437765 TGACCAGTGCAGAGATCAAAC pLKO_005 2072 CDS 100% 10.800 7.560 N Afap1l2 n/a
16 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 3313 3UTR 100% 4.950 2.475 Y ERAP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017016797.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.