Transcript: Human XM_017017160.1

PREDICTED: Homo sapiens solute carrier family 22 member 9 (SLC22A9), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC22A9 (114571)
Length:
2523
CDS:
539..1507

Additional Resources:

NCBI RefSeq record:
XM_017017160.1
NBCI Gene record:
SLC22A9 (114571)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017017160.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000431717 TGCCCTTCTGGTATTGCATTT pLKO_005 560 CDS 100% 10.800 8.640 N SLC22A9 n/a
2 TRCN0000043456 CCTCCTGTCCTTTACGAGATT pLKO.1 901 CDS 100% 4.950 3.960 N SLC22A9 n/a
3 TRCN0000043454 GCCAAGATGCACTCTTGAGAA pLKO.1 203 5UTR 100% 0.495 0.347 N SLC22A9 n/a
4 TRCN0000043455 GCCATCATATTTGTGCCACAA pLKO.1 1112 CDS 100% 4.050 2.430 N SLC22A9 n/a
5 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 1699 3UTR 100% 4.950 2.475 Y ORAI2 n/a
6 TRCN0000043453 CCTTCCTGAAACCAGGAACAA pLKO.1 1390 CDS 100% 0.495 0.248 Y SLC22A9 n/a
7 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 1696 3UTR 100% 4.950 2.475 Y LOC339059 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017017160.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04657 pDONR223 100% 58.2% 58.2% None 0_1ins693 n/a
2 ccsbBroad304_04657 pLX_304 0% 58.2% 58.2% V5 0_1ins693 n/a
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