Construct: ORF ccsbBroadEn_04657
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011788.1_s300c1, BRDN0000398233
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC22A9 (114571)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114571 | SLC22A9 | solute carrier family 22 me... | NM_080866.3 | 100% | 100% | |
| 2 | human | 114571 | SLC22A9 | solute carrier family 22 me... | XM_017017159.2 | 80.4% | 77.1% | 1288_1289ins313;1335_1336insTGACGCAGTTT |
| 3 | human | 114571 | SLC22A9 | solute carrier family 22 me... | XM_017017160.1 | 58.2% | 58.2% | 0_1ins693 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1728
- ORF length:
- 1659
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCCTTTCAG GACCTCCTGG GTCACGCTGG TGACCTGTGG AGATTCCAGA 121 TCCTTCAGAC TGTTTTTCTC TCAATCTTTG CTGTTGCTAC ATACCTTCAT TTTATGCTGG 181 AGAACTTCAC TGCATTCATA CCTGGCCATC GCTGCTGGGT CCACATCCTG GACAATGACA 241 CTGTCTCTGA CAATGACACT GGGGCCCTCA GCCAAGATGC ACTCTTGAGA ATCTCCATCC 301 CACTGGACTC AAACATGAGG CCAGAGAAGT GTCGTCGCTT TGTTCATCCT CAGTGGCAGC 361 TCCTTCACCT GAATGGGACC TTCCCCAACA CAAGTGACGC AGACATGGAG CCCTGTGTGG 421 ATGGCTGGGT GTATGACAGA ATCTCCTTCT CATCCACCAT CGTGACTGAG TGGGATCTGG 481 TATGTGACTC TCAATCACTG ACTTCAGTGG CTAAATTTGT ATTCATGGCT GGAATGATGG 541 TGGGAGGCAT CCTAGGCGGT CATTTATCAG ACAGGTTTGG GAGAAGGTTC GTGCTCAGAT 601 GGTGTTACCT CCAGGTTGCC ATTGTTGGCA CCTGTGCAGC CTTGGCTCCC ACCTTCCTCA 661 TTTACTGCTC ACTACGCTTC TTGTCTGGGA TTGCTGCAAT GAGCCTCATA ACAAATACTA 721 TTATGTTAAT AGCCGAGTGG GCAACACACA GATTCCAGGC CATGGGAATT ACATTGGGAA 781 TGTGCCCTTC TGGTATTGCA TTTATGACCC TGGCAGGCCT GGCTTTTGCC ATTCGAGACT 841 GGCATATCCT CCAGCTGGTG GTGTCTGTAC CATACTTTGT GATCTTTCTG ACCTCAAGTT 901 GGCTGCTAGA GTCTGCTCGG TGGCTCATTA TCAACAATAA ACCAGAGGAA GGCTTAAAGG 961 AACTTAGAAA AGCTGCACAC AGGAGTGGAA TGAAGAATGC CAGAGACACC CTAACCCTGG 1021 AGATTTTGAA ATCCACCATG AAAAAAGAAC TGGAGGCAGC ACAAAAAAAA AAACCTTCTC 1081 TGTGTGAAAT GCTCCACATG CCCAACATAT GTAAAAGGAT CTCCCTCCTG TCCTTTACGA 1141 GATTTGCAAA CTTTATGGCC TATTTTGGCC TTAATCTCCA TGTCCAGCAT CTGGGGAACA 1201 ATGTTTTCCT GTTGCAGACT CTCTTTGGTG CAGTCATCCT CCTGGCCAAC TGTGTTGCAC 1261 CTTGGGCACT GAAATACATG AACCGTCGAG CAAGCCAGAT GCTTCTCATG TTCCTACTGG 1321 CAATCTGCCT TCTGGCCATC ATATTTGTGC CACAAGAAAT GCAGACGCTG CGTGAGGTTT 1381 TGGCAACACT GGGCTTAGGA GCGTCTGCTC TTGCCAATAC CCTTGCTTTT GCCCATGGAA 1441 ATGAAGTAAT TCCCACCATA ATCAGGGCAA GAGCTATGGG GATCAATGCA ACCTTTGCTA 1501 ATATAGCAGG AGCCCTGGCT CCCCTCATGA TGATCCTAAG TGTGTATTCT CCACCCCTGC 1561 CCTGGATCAT CTATGGAGTC TTCCCCTTCA TCTCTGGCTT TGCTTTCCTC CTCCTTCCTG 1621 AAACCAGGAA CAAGCCTCTG TTTGACACCA TCCAGGATGA GAAAAATGAG AGAAAAGACC 1681 CCAGAGAACC AAAGCAAGAG GATCCGAGAG TGGAAGTGAC GCAGTTTTTG CCAACTTTCT 1741 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac