Transcript: Human XM_017017319.2

PREDICTED: Homo sapiens folate hydrolase 1B (FOLH1B), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FOLH1B (219595)
Length:
2322
CDS:
122..2203

Additional Resources:

NCBI RefSeq record:
XM_017017319.2
NBCI Gene record:
FOLH1B (219595)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017017319.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000414382 GTCTCAAAGTGTCCTACAATG pLKO_005 915 CDS 100% 10.800 6.480 N FOLH1B n/a
2 TRCN0000118405 CTACCAATGAAGTGACGAGAA pLKO.1 993 CDS 100% 4.050 2.430 N FOLH1B n/a
3 TRCN0000006808 CCCAACTACATCTCAATAATT pLKO.1 323 CDS 100% 15.000 7.500 Y FOLH1 n/a
4 TRCN0000427513 GAGTCATTCCCAGGAATTTAT pLKO_005 2057 CDS 100% 15.000 7.500 Y FOLH1B n/a
5 TRCN0000006809 CCAATGAAGCTACTAACATTA pLKO.1 87 5UTR 100% 13.200 6.600 Y FOLH1 n/a
6 TRCN0000414521 CTTTATGAAAGTTGGACTAAA pLKO_005 1427 CDS 100% 13.200 6.600 Y FOLH1B n/a
7 TRCN0000415115 AGAGCATTTATTGATCCATTA pLKO_005 1967 CDS 100% 10.800 5.400 Y FOLH1B n/a
8 TRCN0000430965 TTCGAGGAGGGATGGTGTTTG pLKO_005 1686 CDS 100% 10.800 5.400 Y FOLH1B n/a
9 TRCN0000118403 CCTGGCTTTACTGGAAACTTT pLKO.1 941 CDS 100% 5.625 2.813 Y FOLH1B n/a
10 TRCN0000006807 GCACGAACTGAAGACTTCTTT pLKO.1 488 CDS 100% 5.625 2.813 Y FOLH1 n/a
11 TRCN0000118406 GTCGAGATTATGCTGTAGTTT pLKO.1 1740 CDS 100% 5.625 2.813 Y FOLH1B n/a
12 TRCN0000006811 CCACTGTATCACAGTGTCTAT pLKO.1 1598 CDS 100% 0.495 0.248 Y FOLH1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017017319.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.