Transcript: Human XM_017018084.1

PREDICTED: Homo sapiens protein tyrosine phosphatase receptor type J (PTPRJ), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PTPRJ (5795)
Length:
7959
CDS:
448..4482

Additional Resources:

NCBI RefSeq record:
XM_017018084.1
NBCI Gene record:
PTPRJ (5795)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017018084.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000320604 TGATTCCGGGCACCTTATATA pLKO_005 2255 CDS 100% 15.000 21.000 N PTPRJ n/a
2 TRCN0000320555 ACGAGTCGTCATCTAACTATA pLKO_005 1640 CDS 100% 13.200 18.480 N PTPRJ n/a
3 TRCN0000002871 CCGATACAATGCCACCGTTTA pLKO.1 1485 CDS 100% 10.800 15.120 N PTPRJ n/a
4 TRCN0000320600 CCGATACAATGCCACCGTTTA pLKO_005 1485 CDS 100% 10.800 15.120 N PTPRJ n/a
5 TRCN0000002869 CCACACAAGCACGTATGACAA pLKO.1 2214 CDS 100% 4.950 6.930 N PTPRJ n/a
6 TRCN0000380380 GCACGTATGACAAAGCGATTA pLKO_005 2222 CDS 100% 10.800 8.640 N PTPRJ n/a
7 TRCN0000002870 GCCATAGAGTTCAGGACAAAT pLKO.1 1543 CDS 100% 13.200 9.240 N PTPRJ n/a
8 TRCN0000320602 TCCGAGTATGTCTACCATTTA pLKO_005 2167 CDS 100% 13.200 9.240 N PTPRJ n/a
9 TRCN0000002872 CCTACTGTGTCTTGGAATCTA pLKO.1 4891 3UTR 100% 5.625 3.938 N PTPRJ n/a
10 TRCN0000320601 CCTACTGTGTCTTGGAATCTA pLKO_005 4891 3UTR 100% 5.625 3.938 N PTPRJ n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017018084.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.