Transcript: Human XM_017020742.2

PREDICTED: Homo sapiens cysteinyl-tRNA synthetase 2, mitochondrial (CARS2), transcript variant X16, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CARS2 (79587)
Length:
1232
CDS:
41..1117

Additional Resources:

NCBI RefSeq record:
XM_017020742.2
NBCI Gene record:
CARS2 (79587)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017020742.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000233108 TTGCTCGTGGGAACGCTTATT pLKO_005 579 CDS 100% 13.200 18.480 N CARS2 n/a
2 TRCN0000141201 CAGGTGGGATAGATTTAGCTT pLKO.1 858 CDS 100% 3.000 2.400 N CARS2 n/a
3 TRCN0000233109 CCATCGCTAGTATGGTATTTG pLKO_005 816 CDS 100% 13.200 9.240 N CARS2 n/a
4 TRCN0000233106 CTTGGCCATGCTTGCTCATAT pLKO_005 302 CDS 100% 13.200 9.240 N CARS2 n/a
5 TRCN0000233107 TAGTCATGGTGATGGGTATTA pLKO_005 375 CDS 100% 13.200 9.240 N CARS2 n/a
6 TRCN0000141900 GAGGAGACAAGTATGGCAAAT pLKO.1 639 CDS 100% 10.800 7.560 N CARS2 n/a
7 TRCN0000139785 CACGCCAAAGGCAAAGAAGAA pLKO.1 968 CDS 100% 4.950 3.465 N CARS2 n/a
8 TRCN0000144985 GATGGGTATTACAGATGTAGA pLKO.1 385 CDS 100% 4.950 3.465 N CARS2 n/a
9 TRCN0000140696 GCATAGTCATGGTGATGGGTA pLKO.1 372 CDS 100% 2.640 1.848 N CARS2 n/a
10 TRCN0000144239 CAGTCTTTATGAGGAAGACTT pLKO.1 460 CDS 100% 0.495 0.347 N CARS2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017020742.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.