Transcript: Human XM_017023495.1

PREDICTED: Homo sapiens TBC1 domain family member 24 (TBC1D24), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TBC1D24 (57465)
Length:
5879
CDS:
183..1844

Additional Resources:

NCBI RefSeq record:
XM_017023495.1
NBCI Gene record:
TBC1D24 (57465)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017023495.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000245854 GGAGTGAGAGAAATAAGTTTG pLKO_005 1399 CDS 100% 10.800 8.640 N TBC1D24 n/a
2 TRCN0000245855 ATTGCTGCTGGGTCATGATTT pLKO_005 3329 3UTR 100% 13.200 9.240 N TBC1D24 n/a
3 TRCN0000245857 AGGATGTCCTGCAGGTCTATG pLKO_005 790 CDS 100% 10.800 7.560 N TBC1D24 n/a
4 TRCN0000257752 CTTCTTTGGGACCGGAGAATG pLKO_005 1433 CDS 100% 10.800 7.560 N TBC1D24 n/a
5 TRCN0000245856 TGCAGATGGCCAATGAGAAAG pLKO_005 1090 CDS 100% 10.800 6.480 N TBC1D24 n/a
6 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 3966 3UTR 100% 5.625 2.813 Y KLHL30 n/a
7 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 3966 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017023495.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.