Transcript: Human XM_017024564.2

PREDICTED: Homo sapiens homeobox B8 (HOXB8), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HOXB8 (3218)
Length:
3817
CDS:
2230..2961

Additional Resources:

NCBI RefSeq record:
XM_017024564.2
NBCI Gene record:
HOXB8 (3218)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017024564.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000304443 TGCCTATTCACGCCGTAATTC pLKO_005 3388 3UTR 100% 13.200 18.480 N Hoxb8 n/a
2 TRCN0000285119 TAAGCGGCGAATCGAGGTATC pLKO_005 2748 CDS 100% 6.000 8.400 N HOXB8 n/a
3 TRCN0000016018 CGCTAGTGGTAGTATCTCGTA pLKO.1 3116 3UTR 100% 2.640 3.696 N HOXB8 n/a
4 TRCN0000285121 CGCTAGTGGTAGTATCTCGTA pLKO_005 3116 3UTR 100% 2.640 3.696 N HOXB8 n/a
5 TRCN0000016021 CCCGTCGCAAATCCAGGAGTT pLKO.1 2379 CDS 100% 1.350 1.890 N HOXB8 n/a
6 TRCN0000016020 CCAATTATTATGACTGCGGCT pLKO.1 2291 CDS 100% 0.540 0.756 N HOXB8 n/a
7 TRCN0000016022 CGCGCAGAAGGGCGACAAGAA pLKO.1 2937 CDS 100% 0.000 0.000 N HOXB8 n/a
8 TRCN0000285124 CGCGCAGAAGGGCGACAAGAA pLKO_005 2937 CDS 100% 0.000 0.000 N HOXB8 n/a
9 TRCN0000273964 AGTACGCAGACTGCAAGCTTG pLKO_005 2546 CDS 100% 4.050 3.240 N HOXB8 n/a
10 TRCN0000070880 GTTCCTATTTAATCCCTATCT pLKO.1 2721 CDS 100% 4.950 3.465 N Hoxb8 n/a
11 TRCN0000349142 GTTCCTATTTAATCCCTATCT pLKO_005 2721 CDS 100% 4.950 3.465 N Hoxb8 n/a
12 TRCN0000016019 GAGTTCCTATTTAATCCCTAT pLKO.1 2719 CDS 100% 4.050 2.835 N HOXB8 n/a
13 TRCN0000285122 CGGCAATTTCTACGGCTACGA pLKO_005 2475 CDS 100% 2.640 1.848 N HOXB8 n/a
14 TRCN0000166364 CACACACACACACACACACAA pLKO.1 262 5UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017024564.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.